Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SNORA70.22-201ENST00000517160 124 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.05□□□□□ -2.4
COL6A3P12111 CR383656.7-201ENST00000548164 174 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.05□□□□□ -2.4
COL6A3P12111 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.05□□□□□ -2.4
COL6A3P12111 MIR3937-201ENST00000580135 106 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 U4atac.1-201ENST00000618345 95 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 U6.48-201ENST00000618523 106 ntBASIC0.05□□□□□ -2.4
COL6A3P12111 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
COL6A3P12111 RNU6V-201ENST00000384105 107 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 MIR605-201ENST00000385078 83 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 CETN4P-201ENST00000432407 469 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 TAAR7P-201ENST00000436141 242 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 HMGN2P34-201ENST00000437647 269 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 DDX3P2-201ENST00000446138 111 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.04□□□□□ -2.4
COL6A3P12111 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.04□□□□□ -2.4
COL6A3P12111 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC0.04□□□□□ -2.4
COL6A3P12111 AP003034.1-201ENST00000534621 422 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC0.04□□□□□ -2.4
COL6A3P12111 AC004775.1-201ENST00000607389 753 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC080013.4-201ENST00000607624 649 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC100810.6-201ENST00000638068 285 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.04□□□□□ -2.4
COL6A3P12111 Y_RNA.255-201ENST00000364581 97 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
COL6A3P12111 MIR1267-201ENST00000408723 78 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 RNU6-712P-201ENST00000410558 100 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 RNA5SP501-201ENST00000410990 112 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 KATNBL1P6-201ENST00000453433 915 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 RN7SKP88-201ENST00000516847 250 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 POLR2KP1-201ENST00000553226 168 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC009268.1-201ENST00000561352 1203 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC026271.5-201ENST00000577873 130 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.04□□□□□ -2.4
COL6A3P12111 7SK.8-201ENST00000612110 250 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC093913.1-201ENST00000614178 329 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 7SK.11-201ENST00000615477 250 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 7SK.13-201ENST00000622040 250 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 RNA5SP327-201ENST00000362494 101 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 RNU6-338P-201ENST00000383888 105 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 RNU6-439P-201ENST00000384188 106 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.04□□□□□ -2.4
COL6A3P12111 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.04□□□□□ -2.4
COL6A3P12111 RNU4-54P-201ENST00000516428 129 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 AC006213.4-201ENST00000616184 634 ntBASIC0.04□□□□□ -2.4
COL6A3P12111 MIR95-201ENST00000385072 81 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 RNU6-735P-201ENST00000410612 107 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 SSR1P2-201ENST00000415208 787 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 BET1P1-201ENST00000482276 359 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC111000.5-201ENST00000506559 1178 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC067904.2-201ENST00000517322 1283 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.03□□□□□ -2.4
COL6A3P12111 AC069114.2-201ENST00000604699 304 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC105148.1-201ENST00000604961 409 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC092953.2-201ENST00000608000 699 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC069294.1-201ENST00000608397 350 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 Y_RNA.145-201ENST00000363527 102 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 RNU6-611P-201ENST00000384276 104 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 MIR1290-201ENST00000408735 78 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC096531.1-201ENST00000419107 107 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC104651.1-201ENST00000427559 735 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 UBE2V1P8-201ENST00000437166 265 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 ZNF736P6Y-201ENST00000447526 1213 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.03□□□□□ -2.4
COL6A3P12111 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.03□□□□□ -2.4
COL6A3P12111 AC104057.1-201ENST00000515547 497 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 NRON-201ENST00000517270 370 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 RAB11AP2-201ENST00000545905 639 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC0.03□□□□□ -2.4
COL6A3P12111 AC015688.2-201ENST00000584523 262 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC092354.1-201ENST00000606057 376 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC018926.3-201ENST00000618841 406 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 AC004009.2-201ENST00000623016 728 ntBASIC0.03□□□□□ -2.4
COL6A3P12111 RNU6-1243P-201ENST00000364028 107 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 RNU6-945P-201ENST00000383947 107 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.02□□□□□ -2.41
COL6A3P12111 RPS20P24-201ENST00000457473 361 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 RAP1BP2-201ENST00000478270 544 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 HMGN1P13-201ENST00000505795 138 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AC022493.2-201ENST00000506122 481 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 RNA5SP255-201ENST00000516370 107 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AC109810.1-201ENST00000534066 224 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC0.02□□□□□ -2.41
COL6A3P12111 AC105036.1-201ENST00000566222 271 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC0.02□□□□□ -2.41
COL6A3P12111 AC012669.1-201ENST00000603209 283 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AC106858.1-201ENST00000637497 429 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AL139098.1-201ENST00000407291 389 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.02□□□□□ -2.41
COL6A3P12111 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC0.02□□□□□ -2.41
COL6A3P12111 AC092423.1-201ENST00000430165 186 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AC244505.3-201ENST00000454598 187 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AC114981.1-201ENST00000503897 678 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AC025465.3-201ENST00000510570 311 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 RNU6-983P-201ENST00000516004 103 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 CYCSP27-201ENST00000527643 293 ntBASIC0.02□□□□□ -2.41
COL6A3P12111 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms