| HPRT1 | P00492 | Y_RNA.500-201 | ENST00000384466 | 111 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-1222P-201 | ENST00000384615 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-1060P-201 | ENST00000384664 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | MIR23A-201 | ENST00000385245 | 73 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | ISCA1P6-201 | ENST00000427740 | 390 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | FAR2P3-204 | ENST00000434661 | 444 nt | TSL 2 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC112518.1-201 | ENST00000436089 | 575 nt | TSL 4 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RPL32P28-201 | ENST00000443577 | 397 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AL354994.1-201 | ENST00000445967 | 194 nt | TSL 5 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | MGC32805-203 | ENST00000506053 | 652 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC096745.1-201 | ENST00000509945 | 370 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC063919.1-201 | ENST00000514281 | 254 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC097460.1-201 | ENST00000514624 | 590 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | MIR449C-201 | ENST00000516047 | 92 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-410P-201 | ENST00000517006 | 107 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | SNHG6-202 | ENST00000520619 | 479 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC106038.2-201 | ENST00000520706 | 568 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC107886.1-201 | ENST00000526935 | 516 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AP001893.2-201 | ENST00000526949 | 202 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC009145.3-201 | ENST00000567386 | 476 nt | TSL 3 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | MIR4648-201 | ENST00000580107 | 72 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC087241.4-201 | ENST00000612441 | 480 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC011155.2-201 | ENST00000623202 | 216 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | FANCD2-213 | ENST00000625535 | 117 nt | TSL 5 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | ETDC-201 | ENST00000635820 | 180 nt | APPRIS P1 BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | GS1-279B7.1-204 | ENST00000641809 | 378 nt | BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | ASPM-202 | ENST00000367408 | 3747 nt | TSL 1 (best) BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | CALCRL-201 | ENST00000392370 | 5155 nt | APPRIS P1 TSL 1 (best) BASIC | 1.42 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | OSTN-201 | ENST00000339051 | 402 nt | APPRIS P1 TSL 1 (best) BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-37P-201 | ENST00000362692 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-23P-201 | ENST00000363283 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-105P-201 | ENST00000363909 | 104 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-11P-201 | ENST00000364234 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | Y_RNA.324-201 | ENST00000365165 | 102 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-25P-201 | ENST00000383873 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-1-201 | ENST00000383898 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-48P-201 | ENST00000384161 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-36P-201 | ENST00000384172 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-4P-201 | ENST00000384205 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-5P-201 | ENST00000384238 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-3P-201 | ENST00000384314 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-16P-201 | ENST00000384385 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-15P-201 | ENST00000384534 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-2-201 | ENST00000384627 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-29P-201 | ENST00000384637 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-9-201 | ENST00000384776 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-33P-201 | ENST00000384793 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | MIR1294-201 | ENST00000408503 | 142 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC009310.1-201 | ENST00000414414 | 451 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC007314.1-201 | ENST00000414538 | 565 nt | TSL 4 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | MTND4P20-201 | ENST00000424125 | 869 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AL512656.1-201 | ENST00000427492 | 401 nt | TSL 2 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | HTR2A-AS1-201 | ENST00000430913 | 429 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | KCNQ5-IT1-201 | ENST00000445310 | 563 nt | TSL 2 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC079448.1-201 | ENST00000449377 | 373 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AL162395.1-201 | ENST00000457882 | 422 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC093730.1-201 | ENST00000508825 | 448 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC004054.1-201 | ENST00000515111 | 270 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-1178P-201 | ENST00000516674 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-759P-201 | ENST00000516740 | 103 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-232P-201 | ENST00000517144 | 64 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC007991.3-201 | ENST00000517623 | 502 nt | TSL 4 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC099554.1-201 | ENST00000520032 | 572 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | CBX3P4-201 | ENST00000538909 | 354 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | ZNF321P-202 | ENST00000550843 | 495 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC008015.1-201 | ENST00000555505 | 465 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC104581.2-201 | ENST00000572227 | 430 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC025754.2-201 | ENST00000606491 | 432 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | RNU6-6P-201 | ENST00000606623 | 107 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC091965.1-202 | ENST00000607662 | 397 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC099842.1-201 | ENST00000619919 | 596 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AF246928.1-201 | ENST00000623768 | 87 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC006355.2-201 | ENST00000629240 | 317 nt | TSL 3 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | CFHR4-202 | ENST00000367416 | 2178 nt | APPRIS P1 TSL 2 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | NEDD1-204 | ENST00000457368 | 3162 nt | TSL 2 BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | AC245060.5-201 | ENST00000610778 | 3293 nt | BASIC | 1.41 | □□□□□ -2.18 | | |
| HPRT1 | P00492 | IL2-201 | ENST00000226730 | 1029 nt | APPRIS P1 TSL 1 (best) BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AL356292.1-201 | ENST00000283110 | 373 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | RNU6-1303P-201 | ENST00000364841 | 107 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | RNU6-715P-201 | ENST00000365204 | 103 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | SNORA12-201 | ENST00000391162 | 147 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AL031577.2-201 | ENST00000404133 | 280 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | RNU6-1245P-201 | ENST00000411130 | 106 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | TTTY3-201 | ENST00000417334 | 344 nt | TSL 1 (best) BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AL355674.1-201 | ENST00000423681 | 648 nt | TSL 1 (best) BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AL645568.3-201 | ENST00000433683 | 316 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | ART2BP-201 | ENST00000453501 | 499 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | SNRPFP4-201 | ENST00000456366 | 242 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | LINC01198-202 | ENST00000458282 | 558 nt | TSL 5 BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | SNRPGP7-201 | ENST00000469016 | 106 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AC104136.1-201 | ENST00000512969 | 394 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | RNU6-970P-201 | ENST00000516312 | 107 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | RNVU1-2-201 | ENST00000516326 | 135 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | RNU6ATAC12P-201 | ENST00000516542 | 115 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AC115990.1-201 | ENST00000526957 | 301 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AHI1-212 | ENST00000528103 | 441 nt | TSL 1 (best) BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AC110588.1-201 | ENST00000559699 | 137 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | LINC01570-201 | ENST00000561572 | 434 nt | TSL 3 BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | MIR3682-201 | ENST00000581338 | 84 nt | BASIC | 1.4 | □□□□□ -2.19 | | |
| HPRT1 | P00492 | AP000654.2-201 | ENST00000605633 | 586 nt | BASIC | 1.4 | □□□□□ -2.19 | | |