Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RNU6-456P-201ENST00000384493 107 ntBASIC1.93□□□□□ -2.1
MSH4O15457 MIR561-201ENST00000385216 97 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AL355497.1-201ENST00000406262 551 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AC074117.2-201ENST00000417130 397 ntBASIC1.93□□□□□ -2.1
MSH4O15457 MTATP6P17-201ENST00000431030 672 ntBASIC1.93□□□□□ -2.1
MSH4O15457 CETN4P-201ENST00000432407 469 ntBASIC1.93□□□□□ -2.1
MSH4O15457 RPS29P15-201ENST00000458329 171 ntBASIC1.93□□□□□ -2.1
MSH4O15457 RPS27P21-201ENST00000486977 252 ntBASIC1.93□□□□□ -2.1
MSH4O15457 RN7SL274P-201ENST00000492268 272 ntBASIC1.93□□□□□ -2.1
MSH4O15457 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 SNORA4.4-201ENST00000515921 135 ntBASIC1.93□□□□□ -2.1
MSH4O15457 RNU6-1178P-201ENST00000516674 107 ntBASIC1.93□□□□□ -2.1
MSH4O15457 RNA5SP364-201ENST00000516938 78 ntBASIC1.93□□□□□ -2.1
MSH4O15457 RNU6-586P-201ENST00000517265 104 ntBASIC1.93□□□□□ -2.1
MSH4O15457 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.93□□□□□ -2.1
MSH4O15457 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 AC104581.2-201ENST00000572227 430 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.93□□□□□ -2.1
MSH4O15457 MIR4255-201ENST00000579351 72 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AC090897.2-201ENST00000581715 130 ntBASIC1.93□□□□□ -2.1
MSH4O15457 MIR4448-201ENST00000584360 86 ntBASIC1.93□□□□□ -2.1
MSH4O15457 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AC098657.3-201ENST00000620434 263 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AC022079.1-201ENST00000621546 602 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AL031601.2-202ENST00000622650 282 ntBASIC1.93□□□□□ -2.1
MSH4O15457 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.93□□□□□ -2.1
MSH4O15457 ZNF72P-201ENST00000425869 1908 ntBASIC1.93□□□□□ -2.1
MSH4O15457 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
MSH4O15457 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.93□□□□□ -2.1
MSH4O15457 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
MSH4O15457 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.92□□□□□ -2.1
MSH4O15457 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
MSH4O15457 RNU6-212P-201ENST00000362642 104 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RNU6-655P-201ENST00000362858 107 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RNU6-78P-201ENST00000362897 107 ntBASIC1.92□□□□□ -2.1
MSH4O15457 SNORA16B-201ENST00000364674 135 ntBASIC1.92□□□□□ -2.1
MSH4O15457 SNORA25B-201ENST00000365507 128 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RNU6-1029P-201ENST00000384109 107 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RNA5SP213-201ENST00000391031 106 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RNU2-3P-201ENST00000410144 191 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RNA5SP390-201ENST00000410191 113 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RNU6-607P-201ENST00000411283 108 ntBASIC1.92□□□□□ -2.1
MSH4O15457 OR9R1P-201ENST00000412200 877 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.92□□□□□ -2.1
MSH4O15457 EDDM3CP-201ENST00000415977 425 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.92□□□□□ -2.1
MSH4O15457 PIGFP2-201ENST00000421400 651 ntBASIC1.92□□□□□ -2.1
MSH4O15457 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.92□□□□□ -2.1
MSH4O15457 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.92□□□□□ -2.1
MSH4O15457 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.92□□□□□ -2.1
MSH4O15457 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.92□□□□□ -2.1
MSH4O15457 KATNBL1P3-201ENST00000443475 909 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC079448.1-201ENST00000449377 373 ntBASIC1.92□□□□□ -2.1
MSH4O15457 MTCO3P9-201ENST00000506989 781 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC074344.1-201ENST00000512823 224 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC104136.1-201ENST00000512969 394 ntBASIC1.92□□□□□ -2.1
MSH4O15457 SNORA25.15-201ENST00000516487 89 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RN7SKP219-201ENST00000516825 296 ntBASIC1.92□□□□□ -2.1
MSH4O15457 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.92□□□□□ -2.1
MSH4O15457 AC007834.2-201ENST00000536310 343 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.92□□□□□ -2.1
MSH4O15457 OSBPL9P5-201ENST00000542581 171 ntBASIC1.92□□□□□ -2.1
MSH4O15457 MIR3913-1-201ENST00000577744 102 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC008088.1-201ENST00000580993 280 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC040904.1-201ENST00000590850 223 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AL590229.1-201ENST00000603497 542 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC022202.1-201ENST00000613515 211 ntBASIC1.92□□□□□ -2.1
MSH4O15457 RMST_7.1-201ENST00000621935 268 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC078883.4-201ENST00000623218 367 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AC090517.3-201ENST00000625170 141 ntBASIC1.92□□□□□ -2.1
MSH4O15457 AL359851.1-201ENST00000569460 4997 ntBASIC1.91□□□□□ -2.1
MSH4O15457 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
MSH4O15457 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
MSH4O15457 RNU1-17P-201ENST00000363022 152 ntBASIC1.91□□□□□ -2.1
MSH4O15457 RNU6-181P-201ENST00000363225 107 ntBASIC1.91□□□□□ -2.1
MSH4O15457 RNU6-715P-201ENST00000365204 103 ntBASIC1.91□□□□□ -2.1
MSH4O15457 RNU5E-7P-201ENST00000365290 117 ntBASIC1.91□□□□□ -2.1
MSH4O15457 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.91□□□□□ -2.1
MSH4O15457 RNU2-23P-201ENST00000410545 195 ntBASIC1.91□□□□□ -2.1
MSH4O15457 CYCSP33-201ENST00000414485 327 ntBASIC1.91□□□□□ -2.1
MSH4O15457 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.91□□□□□ -2.1
MSH4O15457 AL596276.1-201ENST00000434465 418 ntBASIC1.91□□□□□ -2.1
MSH4O15457 AL603825.1-201ENST00000438481 80 ntBASIC1.91□□□□□ -2.1
MSH4O15457 AC022364.2-201ENST00000457963 554 ntBASIC1.91□□□□□ -2.1
MSH4O15457 AL121594.1-201ENST00000475906 575 ntBASIC1.91□□□□□ -2.1
MSH4O15457 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.91□□□□□ -2.1
MSH4O15457 RNU6-445P-201ENST00000516949 107 ntBASIC1.91□□□□□ -2.1
MSH4O15457 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.91□□□□□ -2.1
MSH4O15457 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.91□□□□□ -2.1
MSH4O15457 IMMP1LP2-201ENST00000552954 492 ntBASIC1.91□□□□□ -2.1
MSH4O15457 MIR3618-201ENST00000580330 88 ntBASIC1.91□□□□□ -2.1
MSH4O15457 AC078899.2-201ENST00000595282 212 ntBASIC1.91□□□□□ -2.1
MSH4O15457 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms