Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 BPTFP1-201ENST00000579209 492 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 MIR4645-201ENST00000583158 77 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 AC091805.2-201ENST00000603848 235 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 AC011939.3-201ENST00000613686 466 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 AC130454.1-201ENST00000622948 401 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 RNU6-1151P-201ENST00000384684 107 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 RNA5SP111-201ENST00000411386 101 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 MTCO3P18-201ENST00000440206 761 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 MTCO2P25-201ENST00000447065 681 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AL031313.1-201ENST00000448435 256 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AC233266.1-201ENST00000454518 96 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 MTCO3P7-201ENST00000510008 774 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 RNU5A-4P-201ENST00000516588 111 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AP003049.1-201ENST00000529418 457 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 TRAV32-201ENST00000553993 340 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AC002545.1-201ENST00000592511 181 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AC242852.1-201ENST00000612151 96 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AC123767.1-202ENST00000620407 817 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 AC244015.1-201ENST00000622301 99 ntBASIC-0.13□□□□□ -2.43
CCDC88BA6NC98 MIRLET7D-201ENST00000362263 87 ntBASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 SNORD3E-201ENST00000362899 217 ntBASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 RNU6-778P-201ENST00000363269 103 ntBASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 MTND4P20-201ENST00000424125 869 ntBASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 SNORA3.4-201ENST00000515969 96 ntBASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 SNORA31.4-201ENST00000516049 129 ntBASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 RN7SKP12-201ENST00000516275 143 ntBASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 RMST_4.1-201ENST00000616886 107 ntBASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 PLD1-217ENST00000627725 174 ntTSL 5 BASIC-0.14□□□□□ -2.43
CCDC88BA6NC98 RNU6-30P-201ENST00000384561 107 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 MIR548B-201ENST00000385247 97 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 AL121978.1-201ENST00000402778 359 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 SNORD99-201ENST00000408612 74 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 RPL26P27-201ENST00000414397 437 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 MTCYBP38-201ENST00000417160 1123 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 SNRPEP9-201ENST00000436794 238 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 SNORA31.2-201ENST00000516019 134 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 ANKRD36BP1-202ENST00000604892 1417 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 AC004805.2-201ENST00000605382 482 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 AL360219.1-201ENST00000610230 366 ntBASIC-0.15□□□□□ -2.43
CCDC88BA6NC98 RNU4-79P-201ENST00000362764 141 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 RNU6-39P-201ENST00000384344 107 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 RNU6-331P-201ENST00000384724 107 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 SNORD89-201ENST00000390981 114 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 AC002381.1-201ENST00000447049 280 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 SNRPGP12-201ENST00000449481 213 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 AC048334.1-201ENST00000477975 159 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 RNU6-965P-201ENST00000516721 96 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 RSL24D1P11-201ENST00000591045 491 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 AP002906.1-201ENST00000603405 233 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 AC073349.3-201ENST00000617616 186 ntBASIC-0.16□□□□□ -2.43
CCDC88BA6NC98 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 SNORD114-6-201ENST00000364393 72 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 U8.7-201ENST00000364940 136 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 RNU2-33P-201ENST00000410344 192 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AL353621.1-201ENST00000418219 243 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 PDCL2P1-201ENST00000419302 352 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AC015724.1-201ENST00000478577 156 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AC025459.1-201ENST00000504072 156 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AC093259.1-201ENST00000509755 300 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 RNU6-165P-201ENST00000517170 99 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AL355802.4-201ENST00000607635 548 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AC130324.3-201ENST00000614165 542 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 AC120349.3-201ENST00000624377 529 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 U2.21-201ENST00000637295 81 ntBASIC-0.16□□□□□ -2.44
CCDC88BA6NC98 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 SNORA36.2-201ENST00000384004 127 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 RPL22P22-201ENST00000395439 379 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 HMGN2P22-201ENST00000427588 175 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 RPS29P8-201ENST00000445109 171 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 AL606662.1-201ENST00000445763 553 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 AC130509.1-201ENST00000464158 433 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 AL158211.1-201ENST00000566763 763 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 MIR3169-201ENST00000578032 83 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 SNORD39.3-201ENST00000584451 71 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 AC105148.1-201ENST00000604961 409 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 AL590396.4-201ENST00000636779 956 ntBASIC-0.17□□□□□ -2.44
CCDC88BA6NC98 AC017104.5-201ENST00000637647 639 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms