Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU1-100P-201ENST00000365255 165 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 RNU6-827P-201ENST00000365553 106 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.404-201ENST00000383978 102 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 RNU6-310P-201ENST00000384655 107 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 SNORA75.4-201ENST00000391278 119 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 MIR1302-11-201ENST00000408051 138 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 MIR1302-9-201ENST00000408365 138 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 MIR1302-10-201ENST00000408734 138 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.594-201ENST00000410373 140 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 RNU6-1050P-201ENST00000410388 107 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC023141.4-201ENST00000412031 328 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 TOMM20P4-201ENST00000427861 435 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC025750.2-201ENST00000442609 450 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 MTCO3P10-201ENST00000455912 772 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 RNU7-23P-201ENST00000459465 62 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC128713.1-201ENST00000471495 306 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 RPS26P21-201ENST00000475397 348 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 SNORA43.2-201ENST00000516652 128 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.708-201ENST00000516950 96 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 SNORA31.26-201ENST00000517250 137 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AP004607.1-201ENST00000524456 203 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC021739.1-201ENST00000559631 174 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 HMGN2P15-201ENST00000585707 270 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 RPL12P50-201ENST00000603116 116 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC006023.1-201ENST00000603944 259 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 MTND4LP5-201ENST00000605152 292 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 MIR1302-2-201ENST00000607096 138 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AL157817.1-201ENST00000614264 790 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC007742.2-201ENST00000618226 398 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AL137790.1-201ENST00000634283 177 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AL669831.3-213ENST00000636676 183 ntBASIC3.09□□□□□ -1.91
VPS4AQ9UN37 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS4AQ9UN37 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.92
VPS4AQ9UN37 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.09□□□□□ -1.92
VPS4AQ9UN37 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 Y_RNA.138-201ENST00000363462 102 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 SNORA51.4-201ENST00000364993 124 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 RNU6-842P-201ENST00000384269 107 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 MIR517A-201ENST00000385001 87 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 MIR887-201ENST00000401258 79 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 RNU6-174P-201ENST00000410406 106 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 RNA5SP344-201ENST00000411081 104 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 RNU6-325P-201ENST00000411132 105 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AL365496.1-201ENST00000426885 215 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 USP9YP30-201ENST00000430729 455 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AC005534.2-201ENST00000431047 433 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AL133396.1-201ENST00000432048 687 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 DAP3P1-201ENST00000441522 278 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 Y_RNA.653-201ENST00000459091 95 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AC097473.1-201ENST00000508142 408 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AP002404.1-201ENST00000532005 451 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 CR383656.8-201ENST00000549046 145 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 ANP32BP3-201ENST00000559213 706 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 CYP2C61P-201ENST00000604072 290 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AL080274.1-201ENST00000605565 220 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
VPS4AQ9UN37 AC019193.3-201ENST00000609144 554 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.08□□□□□ -1.92
VPS4AQ9UN37 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 RNU6-428P-201ENST00000362942 107 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 RNU5E-7P-201ENST00000365290 117 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 U8.9-201ENST00000365667 134 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 RNU6-198P-201ENST00000384258 104 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 RNU6-306P-201ENST00000384617 107 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 RNA5SP252-201ENST00000391131 119 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 RNA5SP229-201ENST00000410809 99 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 Y_RNA.646-201ENST00000410980 101 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 RPS15AP10-201ENST00000432472 382 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 Z75741.1-201ENST00000446793 314 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 PCMTD1P1-201ENST00000455560 355 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC027575.1-201ENST00000481064 460 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC020661.2-201ENST00000560114 134 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC010653.1-201ENST00000571108 881 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC078899.3-201ENST00000599065 212 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC093732.2-201ENST00000607950 274 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC009229.3-201ENST00000608056 282 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.07□□□□□ -1.92
VPS4AQ9UN37 MIR6715A-201ENST00000615929 79 ntBASIC3.07□□□□□ -1.92
VPS4AQ9UN37 AC134503.1-201ENST00000633048 54 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms