Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SNORD56.1-201ENST00000362913 68 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 RNU6-1303P-201ENST00000364841 107 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 Y_RNA.399-201ENST00000383955 105 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 MIR186-201ENST00000384988 86 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 MIR95-201ENST00000385072 81 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 RNU6-1158P-201ENST00000391167 107 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AC068050.1-201ENST00000394891 380 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 RNU2-23P-201ENST00000410545 195 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 BTF3L4P1-201ENST00000413813 468 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AL353193.1-201ENST00000421444 268 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AC008267.5-201ENST00000424928 265 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AL591043.1-201ENST00000432461 424 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 GPM6BP3-201ENST00000442797 145 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 RNU2-53P-201ENST00000516257 147 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 RNA5SP148-201ENST00000516527 94 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 RNU7-193P-201ENST00000516723 65 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AC024909.2-201ENST00000553035 286 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 HIF1AP1-201ENST00000553642 175 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 RPL30P11-203ENST00000598995 310 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AL713866.2-201ENST00000603579 219 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AL355297.2-201ENST00000604792 129 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AL354950.2-201ENST00000617939 290 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 U4.3-201ENST00000621047 82 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AC007792.1-201ENST00000623023 402 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AC243829.7-201ENST00000633081 225 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.17□□□□□ -2.06
DDX28Q9NUL7 AL359851.1-201ENST00000569460 4997 ntBASIC2.17□□□□□ -2.06
DDX28Q9NUL7 MTND5P26-201ENST00000426018 1752 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-37P-201ENST00000362692 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 U8.2-201ENST00000363156 134 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-529P-201ENST00000363383 104 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-11P-201ENST00000364234 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 U3.12-201ENST00000364498 214 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-25P-201ENST00000383873 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-1-201ENST00000383898 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-259P-201ENST00000383999 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-48P-201ENST00000384161 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-36P-201ENST00000384172 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-4P-201ENST00000384205 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-5P-201ENST00000384238 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-3P-201ENST00000384314 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-16P-201ENST00000384385 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-15P-201ENST00000384534 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-2-201ENST00000384627 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-29P-201ENST00000384637 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 SNORA41-201ENST00000384675 132 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-9-201ENST00000384776 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-33P-201ENST00000384793 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU2-66P-201ENST00000410650 161 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.16□□□□□ -2.06
DDX28Q9NUL7 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
DDX28Q9NUL7 MTND1P23-201ENST00000416931 372 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 MTCYBP8-201ENST00000422855 651 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
DDX28Q9NUL7 USP9YP14-201ENST00000430663 563 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AC016691.1-201ENST00000441321 413 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AC073415.1-201ENST00000449240 153 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RPL23AP49-201ENST00000492925 468 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RN7SKP24-201ENST00000515888 284 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNA5SP24-201ENST00000516478 95 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AC023050.3-201ENST00000541142 333 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AC004223.2-201ENST00000590309 544 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 RNU6-6P-201ENST00000606623 107 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AC008121.3-201ENST00000618726 433 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AL162373.1-201ENST00000620433 407 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AC064859.1-201ENST00000624741 174 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AP003400.5-201ENST00000624827 617 ntBASIC2.16□□□□□ -2.06
DDX28Q9NUL7 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
DDX28Q9NUL7 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
DDX28Q9NUL7 RNU6-527P-201ENST00000363425 104 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 Y_RNA.255-201ENST00000364581 97 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 MIR518C-201ENST00000384822 101 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 MIR17-201ENST00000385012 84 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC010975.2-201ENST00000427781 588 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 SRIP2-201ENST00000428470 166 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC007969.2-201ENST00000441891 191 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.15□□□□□ -2.07
DDX28Q9NUL7 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.15□□□□□ -2.07
DDX28Q9NUL7 RNU7-180P-201ENST00000459240 63 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 snoU13.14-201ENST00000459372 104 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 RPL23AP45-201ENST00000476406 468 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 MTND3P5-201ENST00000512798 333 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 RNU6-377P-201ENST00000515965 102 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 RNA5SP320-201ENST00000516263 124 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 SNORA25.17-201ENST00000517184 124 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC109479.2-201ENST00000517842 174 ntBASIC2.15□□□□□ -2.07
DDX28Q9NUL7 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms