Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AP000553.6-201ENST00000641242 118 ntBASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.64□□□□□ -1.83
TRIM39Q9HCM9 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AC092268.1-201ENST00000342691 405 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 RNU1-18P-201ENST00000363062 164 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.152-201ENST00000363578 100 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 SNORA14A-201ENST00000364773 135 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.405-201ENST00000383979 100 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 SNORA5A-201ENST00000384111 134 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.451-201ENST00000384200 100 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 RNU6-622P-201ENST00000384272 103 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.524-201ENST00000384564 100 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.561-201ENST00000384694 100 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 HMGN2P8-201ENST00000391458 268 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 MIR190B-201ENST00000401119 79 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AL356057.3-201ENST00000402607 340 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 RN7SKP61-201ENST00000410642 295 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AC138623.1-201ENST00000418060 216 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AL358453.1-201ENST00000422522 250 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AC096644.2-201ENST00000429278 159 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 GOT2P5-201ENST00000433995 546 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 snoU13.30-201ENST00000458951 104 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 RNU7-169P-201ENST00000459456 61 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AP001025.1-201ENST00000486139 332 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 GZMAP1-201ENST00000503054 631 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AC093852.1-201ENST00000503587 266 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AC021146.2-201ENST00000504736 556 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AC008011.1-201ENST00000545989 227 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AL355877.2-201ENST00000603670 358 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 SNORD58B-201ENST00000607313 66 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 U2.1-201ENST00000618978 145 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 AC091812.1-201ENST00000432235 1948 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 MTND5P1-201ENST00000445440 1375 ntBASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
TRIM39Q9HCM9 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.380-201ENST00000365663 111 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 AL359837.1-201ENST00000381357 287 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 EI24P2-201ENST00000397776 1076 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 SNORA11-201ENST00000408789 128 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 ARF4P2-201ENST00000430209 526 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 RPL21P129-201ENST00000491732 478 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 RN7SKP18-201ENST00000516005 275 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 RNU6-1046P-201ENST00000516538 107 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 MIR3186-201ENST00000577404 85 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 AC104695.3-201ENST00000604052 296 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 Z98751.3-201ENST00000604447 521 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 AC124312.5-201ENST00000604451 268 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 AP000560.1-201ENST00000624150 1937 ntBASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.62□□□□□ -1.83
TRIM39Q9HCM9 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 SNORA73.2-201ENST00000364946 201 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.485-201ENST00000384395 102 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 RNU6-1105P-201ENST00000384774 107 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 Y_RNA.645-201ENST00000391229 102 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 SNORA48.7-201ENST00000391302 135 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 ATP5A1P2-201ENST00000412323 255 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AL358176.2-201ENST00000425769 204 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AL365496.1-201ENST00000426885 215 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 MTCO3P29-201ENST00000432119 779 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC244670.1-201ENST00000436879 112 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC009296.1-201ENST00000443146 155 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 SNORD105B-201ENST00000458770 79 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 RPL30P12-201ENST00000474666 353 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 RPL23AP75-201ENST00000491601 451 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 MRPS36P4-201ENST00000534436 298 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AL117187.1-201ENST00000555482 181 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC021231.3-201ENST00000558497 370 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 MIR5188-201ENST00000583467 113 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 RPS29P30-201ENST00000600975 111 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AL391813.1-201ENST00000603098 260 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 RPL23AP88-201ENST00000605759 454 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 RMST_6.1-201ENST00000611980 203 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC087588.2-201ENST00000617667 426 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC091903.1-201ENST00000624322 454 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AL034408.1-202ENST00000636088 415 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC091152.2-201ENST00000591628 2569 ntBASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.61□□□□□ -1.83
TRIM39Q9HCM9 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms