Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
PCIF1Q9H4Z3 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AC017071.1-201ENST00000564407 2204 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-874P-201ENST00000362390 105 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-1280P-201ENST00000365211 107 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-26P-201ENST00000383985 107 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 MIR625-201ENST00000385047 85 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AC124916.1-201ENST00000444020 547 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 RNU7-169P-201ENST00000459456 61 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 RPL30P10-201ENST00000488148 337 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 MIR5188-201ENST00000583467 113 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 AC068831.7-201ENST00000616954 363 ntBASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PCIF1Q9H4Z3 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-858P-201ENST00000362436 107 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 SNORD56.1-201ENST00000362913 68 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 RNU1-140P-201ENST00000365040 165 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-463P-201ENST00000384340 107 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-700P-201ENST00000391043 107 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AC007098.1-201ENST00000420122 367 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 MTCYBP9-201ENST00000431021 303 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AL714022.1-201ENST00000439897 151 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AL031659.1-201ENST00000447075 539 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 U8.20-201ENST00000459445 131 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 MED28P2-201ENST00000475771 317 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AC091874.1-201ENST00000511402 339 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AL590705.4-201ENST00000532209 134 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 CR383656.8-201ENST00000549046 145 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 MIR4644-201ENST00000579929 84 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AC060766.3-201ENST00000591442 263 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 uc_338.1-201ENST00000612113 180 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 7SK.10-201ENST00000621414 298 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AC009541.1-201ENST00000438279 2662 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 AL049781.1-201ENST00000623195 3585 ntBASIC3.61□□□□□ -1.83
PCIF1Q9H4Z3 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 Y_RNA.106-201ENST00000363189 100 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-198P-201ENST00000384258 104 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 RNVU1-14-201ENST00000384770 164 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-101P-201ENST00000410323 104 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC023141.4-201ENST00000412031 328 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC074117.2-201ENST00000417130 397 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 BX679664.1-201ENST00000434429 253 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC007969.2-201ENST00000441891 191 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 OR2AQ1P-201ENST00000451972 200 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 RPL7P49-201ENST00000471402 708 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC021205.2-201ENST00000480069 347 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 MTCO2P24-201ENST00000515611 426 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 Y_RNA.721-201ENST00000517207 102 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 SNORA31.23-201ENST00000517219 133 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC008269.2-201ENST00000561915 1105 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AC006600.1-201ENST00000572529 153 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AL138880.2-201ENST00000616214 239 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AL132822.1-201ENST00000617063 513 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 AL138825.1-201ENST00000618587 192 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.6□□□□□ -1.83
PCIF1Q9H4Z3 Z83843.1-201ENST00000604070 3685 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 RNU6-196P-201ENST00000384315 107 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 RNA5SP252-201ENST00000391131 119 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 RNA5SP44-201ENST00000410446 133 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 DPH3P2-201ENST00000422618 250 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC034236.1-201ENST00000469891 373 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 RPL22P13-201ENST00000493291 347 ntBASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.59□□□□□ -1.83
PCIF1Q9H4Z3 AC074250.1-201ENST00000511117 192 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms