Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ARL5AP1-201ENST00000418991 388 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 EIF1P1-201ENST00000421436 341 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AC009296.1-201ENST00000443146 155 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AL353705.4-201ENST00000449661 238 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 FGF7P6-202ENST00000451282 293 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AC013470.1-201ENST00000453438 462 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 snoU109.2-201ENST00000459316 135 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AP001324.2-201ENST00000461163 319 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.2□□□□□ -2.06
LIME1Q9H400 RN7SL636P-201ENST00000497504 294 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 MTCYBP40-201ENST00000509390 1135 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AC098799.2-201ENST00000509466 868 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 RNU6-189P-201ENST00000516120 101 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 RNU5B-3P-201ENST00000516601 115 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 COPS8P3-201ENST00000526024 482 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 CYCSP27-201ENST00000527643 293 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.2□□□□□ -2.06
LIME1Q9H400 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.2□□□□□ -2.06
LIME1Q9H400 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.2□□□□□ -2.06
LIME1Q9H400 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.2□□□□□ -2.06
LIME1Q9H400 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.2□□□□□ -2.06
LIME1Q9H400 BNIP3P25-201ENST00000596023 559 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AC123912.5-201ENST00000605470 343 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.2□□□□□ -2.06
LIME1Q9H400 RMST_3.1-201ENST00000611651 109 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AC026585.1-201ENST00000619582 524 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 AC121333.1-201ENST00000567488 2709 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
LIME1Q9H400 AL109809.4-201ENST00000603520 2185 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
LIME1Q9H400 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
LIME1Q9H400 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.19□□□□□ -2.06
LIME1Q9H400 Y_RNA.89-201ENST00000363031 102 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 Y_RNA.378-201ENST00000365652 113 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 RNU6-622P-201ENST00000384272 103 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 RNU6-843P-201ENST00000384454 104 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 MIR27B-201ENST00000385129 97 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 MIR147B-201ENST00000390185 80 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AL096701.2-201ENST00000416920 238 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.19□□□□□ -2.06
LIME1Q9H400 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.19□□□□□ -2.06
LIME1Q9H400 AC006026.2-201ENST00000457376 180 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 HMGN2P26-201ENST00000463169 339 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC018437.1-201ENST00000492214 406 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AIG1P1-201ENST00000503376 148 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC108210.2-201ENST00000503681 201 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 SNORA14.1-201ENST00000516113 141 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 RNA5SP282-201ENST00000516355 108 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC026241.1-201ENST00000517873 2142 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.19□□□□□ -2.06
LIME1Q9H400 AC078814.3-201ENST00000553036 491 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC090616.3-201ENST00000582184 217 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.19□□□□□ -2.06
LIME1Q9H400 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.19□□□□□ -2.06
LIME1Q9H400 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.19□□□□□ -2.06
LIME1Q9H400 APOOP1-201ENST00000604695 592 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 RPL23AP88-201ENST00000605759 454 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 RNU6-89P-201ENST00000606519 100 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.19□□□□□ -2.06
LIME1Q9H400 AC092807.2-201ENST00000609367 243 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 U4.3-201ENST00000621047 82 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC010297.1-201ENST00000623948 149 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 MIR3529-201ENST00000637713 78 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 MIR7515-201ENST00000637837 67 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 U4.7-201ENST00000638126 106 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC241585.2-209ENST00000638217 143 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.19□□□□□ -2.06
LIME1Q9H400 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LIME1Q9H400 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.19□□□□□ -2.06
LIME1Q9H400 AL359854.1-201ENST00000614203 1594 ntBASIC2.19□□□□□ -2.06
LIME1Q9H400 AC007336.1-201ENST00000576365 3828 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LIME1Q9H400 RNU4-66P-201ENST00000365199 138 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 DEFA7P-201ENST00000382676 285 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 MIR627-201ENST00000384979 97 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 RNA5SP219-201ENST00000390940 113 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AL117339.3-201ENST00000418733 162 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 USP9YP20-201ENST00000419224 558 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 ZNF885P-201ENST00000420174 1098 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.18□□□□□ -2.06
LIME1Q9H400 ERLEC1P1-201ENST00000433806 578 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AL121601.2-201ENST00000438019 707 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AL603825.1-201ENST00000438481 80 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.18□□□□□ -2.06
LIME1Q9H400 AC117503.1-201ENST00000472241 394 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 RPL23AP45-201ENST00000476406 468 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 RPL21P99-201ENST00000480369 423 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AP001025.1-201ENST00000486139 332 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.18□□□□□ -2.06
LIME1Q9H400 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.18□□□□□ -2.06
LIME1Q9H400 Y_RNA.665-201ENST00000516177 98 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 RNU6-1069P-201ENST00000516612 133 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 SNORA31.23-201ENST00000517219 133 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.18□□□□□ -2.06
LIME1Q9H400 BTF3P12-201ENST00000519620 469 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.18□□□□□ -2.06
LIME1Q9H400 AC243972.3-201ENST00000539655 198 ntBASIC2.18□□□□□ -2.06
LIME1Q9H400 AC079598.5-201ENST00000547460 117 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms