Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.52□□□□□ -2.01
USP28Q96RU2 MTCO2P3-201ENST00000442543 421 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.52□□□□□ -2.01
USP28Q96RU2 AC233279.1-201ENST00000455300 423 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 RNU7-66P-201ENST00000459469 62 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 RNU6-1208P-201ENST00000459588 107 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 AC117503.1-201ENST00000472241 394 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 AL049873.1-201ENST00000480540 376 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.52□□□□□ -2.01
USP28Q96RU2 SCARNA11.3-201ENST00000517276 130 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 BTF3P12-201ENST00000519620 469 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.52□□□□□ -2.01
USP28Q96RU2 AC090115.3-201ENST00000553218 849 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 AC005730.3-201ENST00000583067 366 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 AC018638.8-201ENST00000588755 281 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 AC021646.1-201ENST00000605469 484 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.52□□□□□ -2.01
USP28Q96RU2 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.52□□□□□ -2.01
USP28Q96RU2 U2.21-201ENST00000637295 81 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.52□□□□□ -2.01
USP28Q96RU2 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP28Q96RU2 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
USP28Q96RU2 RNU6-1252P-201ENST00000363054 104 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 RNU6-384P-201ENST00000364900 104 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 SNORA32.2-201ENST00000384049 122 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 MIR301A-201ENST00000385261 86 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 NDUFB4P4-201ENST00000404822 243 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 RNU2-3P-201ENST00000410144 191 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 POLHP1-201ENST00000411806 470 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 AC007064.1-201ENST00000412238 351 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 CYCSP33-201ENST00000414485 327 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.51□□□□□ -2.01
USP28Q96RU2 RPS15AP5-201ENST00000436276 388 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.51□□□□□ -2.01
USP28Q96RU2 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 MTCO3P18-201ENST00000440206 761 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 AL583843.1-201ENST00000456070 346 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 RPL26P9-201ENST00000457466 433 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 AC107626.1-201ENST00000471084 183 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 RNU1-103P-201ENST00000516502 125 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 RNU6-572P-201ENST00000516724 80 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 SNORA31.19-201ENST00000517079 126 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 RNU6-1314P-201ENST00000517139 104 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.51□□□□□ -2.01
USP28Q96RU2 MYL12BP1-201ENST00000569826 507 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 AC002044.1-201ENST00000606707 158 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 AL121757.2-201ENST00000611223 313 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.51□□□□□ -2.01
USP28Q96RU2 AC092794.2-201ENST00000620933 563 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.51□□□□□ -2.01
USP28Q96RU2 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.51□□□□□ -2.01
USP28Q96RU2 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
USP28Q96RU2 MTND5P6-201ENST00000422338 1798 ntBASIC2.51□□□□□ -2.01
USP28Q96RU2 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.5□□□□□ -2.01
USP28Q96RU2 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.5□□□□□ -2.01
USP28Q96RU2 RNU6-778P-201ENST00000363269 103 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 Y_RNA.157-201ENST00000363638 102 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 Y_RNA.279-201ENST00000364763 95 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP28Q96RU2 Z98749.2-208ENST00000381646 500 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 RNU6-166P-201ENST00000384371 107 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 RNA5SP118-201ENST00000410385 109 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 RNU6-373P-201ENST00000411247 98 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.5□□□□□ -2.01
USP28Q96RU2 AL513185.2-201ENST00000425543 193 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 WARS2P1-201ENST00000429678 537 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.5□□□□□ -2.01
USP28Q96RU2 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.5□□□□□ -2.01
USP28Q96RU2 Y_RNA.654-201ENST00000497848 106 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 HMGN1P12-201ENST00000499125 195 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.5□□□□□ -2.01
USP28Q96RU2 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.5□□□□□ -2.01
USP28Q96RU2 AC114781.4-201ENST00000513707 639 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.5□□□□□ -2.01
USP28Q96RU2 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.5□□□□□ -2.01
USP28Q96RU2 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.5□□□□□ -2.01
USP28Q96RU2 SCOCP1-201ENST00000554676 349 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 MTCO3P23-201ENST00000561363 289 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 AC074050.1-201ENST00000563247 211 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 AC023824.2-201ENST00000566185 400 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.5□□□□□ -2.01
USP28Q96RU2 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.5□□□□□ -2.01
USP28Q96RU2 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.5□□□□□ -2.01
USP28Q96RU2 Z82243.1-201ENST00000609432 473 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 HMGB1P24-202ENST00000615653 685 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 AC022418.1-201ENST00000624118 445 ntBASIC2.5□□□□□ -2.01
USP28Q96RU2 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP28Q96RU2 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.5□□□□□ -2.01
USP28Q96RU2 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
USP28Q96RU2 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
USP28Q96RU2 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
USP28Q96RU2 RNU6-867P-201ENST00000364956 107 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 RNU6-395P-201ENST00000365662 106 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 RNU6-434P-201ENST00000384376 107 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 MIR524-201ENST00000385242 87 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 SNORA40C-201ENST00000391285 128 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 RNU4-26P-201ENST00000410270 107 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 RPL21P111-201ENST00000418453 477 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AC007560.1-201ENST00000426912 237 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms