Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RNU5E-7P-201ENST00000365290 117 ntBASIC4.75□□□□□ -1.65
TRERF1Q96PN7 RNU6-898P-201ENST00000365627 104 ntBASIC4.75□□□□□ -1.65
TRERF1Q96PN7 RNU6-281P-201ENST00000384212 103 ntBASIC4.75□□□□□ -1.65
TRERF1Q96PN7 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 AC006011.1-201ENST00000442758 349 ntBASIC4.75□□□□□ -1.65
TRERF1Q96PN7 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 FABP5P15-201ENST00000453566 214 ntBASIC4.75□□□□□ -1.65
TRERF1Q96PN7 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 MIR2114-201ENST00000516645 80 ntBASIC4.75□□□□□ -1.65
TRERF1Q96PN7 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 AC002545.1-201ENST00000592511 181 ntBASIC4.75□□□□□ -1.65
TRERF1Q96PN7 AC005176.2-201ENST00000596933 147 ntBASIC4.75□□□□□ -1.65
TRERF1Q96PN7 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
TRERF1Q96PN7 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 RNU6-834P-201ENST00000362367 110 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 RNU6-78P-201ENST00000362897 107 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 Y_RNA.121-201ENST00000363309 113 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 RNU4-17P-201ENST00000365598 141 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 RNU6-1056P-201ENST00000383996 107 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 HLFP1-201ENST00000402375 499 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 RN7SKP202-201ENST00000410439 330 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 EBAG9P1-201ENST00000418955 543 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 BTF3P11-201ENST00000426582 477 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 SNORA84-201ENST00000459229 133 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 RN7SL132P-201ENST00000478131 296 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 HSPE1P6-201ENST00000479457 291 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AC074050.1-201ENST00000563247 211 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 RN7SL703P-201ENST00000578485 302 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AC005520.5-201ENST00000613926 164 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AL357075.2-201ENST00000614906 189 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 AC092628.2-201ENST00000622492 339 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 Z82217.1-201ENST00000625157 8149 ntBASIC4.74□□□□□ -1.65
TRERF1Q96PN7 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRERF1Q96PN7 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 RNU6-275P-201ENST00000364910 107 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 RNU6-1286P-201ENST00000383871 107 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 RNU6-1145P-201ENST00000384246 107 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 RNU6-166P-201ENST00000384371 107 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 RNA5SP306-201ENST00000411087 107 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 HSPE1P12-201ENST00000412576 301 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 RAB9AP3-201ENST00000412737 573 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 RPS29P7-201ENST00000439662 171 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 RAB9AP1-201ENST00000449393 573 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 AC139453.3-201ENST00000493276 369 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 AC091874.1-201ENST00000511402 339 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 SNORA31.19-201ENST00000517079 126 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 SNORA31.20-201ENST00000517111 133 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 AC023632.4-201ENST00000517783 191 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 CYP4A43P-201ENST00000568156 121 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 MIR3613-201ENST00000579844 87 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 AL606490.9-201ENST00000603331 271 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 AC034229.5-201ENST00000624258 185 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 AC092593.1-201ENST00000515413 1815 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 AC110491.1-201ENST00000562191 2010 ntBASIC4.73□□□□□ -1.65
TRERF1Q96PN7 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
TRERF1Q96PN7 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
TRERF1Q96PN7 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.72□□□□□ -1.65
TRERF1Q96PN7 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TRERF1Q96PN7 FAM91A3P-201ENST00000456826 2544 ntBASIC4.72□□□□□ -1.65
TRERF1Q96PN7 FAM35DP-201ENST00000323387 2712 ntBASIC4.72□□□□□ -1.65
TRERF1Q96PN7 RNU6-1272P-201ENST00000362776 107 ntBASIC4.72□□□□□ -1.65
TRERF1Q96PN7 Y_RNA.420-201ENST00000384043 110 ntBASIC4.72□□□□□ -1.65
TRERF1Q96PN7 SNORA40C-201ENST00000391285 128 ntBASIC4.72□□□□□ -1.65
TRERF1Q96PN7 CYP4F29P-201ENST00000420685 446 ntBASIC4.72□□□□□ -1.65
TRERF1Q96PN7 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.72□□□□□ -1.65
TRERF1Q96PN7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4.72□□□□□ -1.65
TRERF1Q96PN7 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC4.72□□□□□ -1.65
TRERF1Q96PN7 MIR4679-2-201ENST00000578358 77 ntBASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms