Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC112492.4-201ENST00000456549 352 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC093899.1-201ENST00000457984 376 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 ATP5EP1-201ENST00000510257 156 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC013828.2-201ENST00000532487 235 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC022616.8-201ENST00000533569 253 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC068587.4-201ENST00000533893 186 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC084364.2-201ENST00000546924 395 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 MIR3146-201ENST00000580367 79 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC174048.1-201ENST00000603389 144 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AL592221.1-201ENST00000605266 382 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC080013.3-201ENST00000606839 578 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC108747.1-201ENST00000609508 535 ntBASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.2□□□□□ -2.22
CCDC112Q8NEF3 RNU6-395P-201ENST00000365662 106 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 SRIP3-201ENST00000413200 219 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 UBE2V1P10-201ENST00000414685 269 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 AC079448.1-201ENST00000449377 373 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 snoU13.9-201ENST00000458927 103 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 RNA5SP220-201ENST00000516298 104 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 RNU6-677P-201ENST00000516914 101 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 SNORA31.17-201ENST00000516953 127 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 AC018630.3-201ENST00000542637 96 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 AC019288.1-201ENST00000557918 224 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 AP000860.1-201ENST00000605250 559 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 AC093648.1-201ENST00000623546 606 ntBASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CCDC112Q8NEF3 RNU6-655P-201ENST00000362858 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-946P-201ENST00000383878 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-1-201ENST00000383898 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-42P-201ENST00000384165 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-36P-201ENST00000384172 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-4P-201ENST00000384205 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-5P-201ENST00000384238 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-72P-201ENST00000384285 79 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-3P-201ENST00000384314 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-2-201ENST00000384627 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-9-201ENST00000384776 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-33P-201ENST00000384793 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 SNORA40.4-201ENST00000390971 128 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RPL21P1-201ENST00000399532 476 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 CBX3P9-201ENST00000402326 552 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 Y_RNA.623-201ENST00000411128 95 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AC009518.2-201ENST00000418056 731 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AL365400.1-201ENST00000431854 640 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 CR769776.1-201ENST00000441254 787 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AC245517.4-201ENST00000448601 281 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 snoU109.2-201ENST00000459316 135 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 snoU13.14-201ENST00000459372 104 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 OR2A41P-201ENST00000473586 105 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AC010409.1-201ENST00000487382 476 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AC119751.4-201ENST00000507498 357 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNA5SP445-201ENST00000515889 115 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-1092P-201ENST00000516955 87 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RN7SKP256-201ENST00000517201 314 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-902P-201ENST00000517212 91 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AC023050.2-201ENST00000544968 387 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 MIR4295-201ENST00000585286 85 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 WISP1-OT1-201ENST00000602893 642 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AL022154.1-201ENST00000604698 785 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 RNU6-6P-201ENST00000606623 107 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AL355816.2-201ENST00000610049 647 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 AL138960.2-201ENST00000625145 535 ntBASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 UGP2-231ENST00000627474 264 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC112Q8NEF3 CBX3P1-201ENST00000325243 554 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 Y_RNA.46-201ENST00000362695 102 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 RNU6-960P-201ENST00000364056 120 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 RNU2-23P-201ENST00000410545 195 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AL353752.1-201ENST00000454946 260 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 HMGB1P30-201ENST00000492455 606 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AC002400.1-201ENST00000569310 726 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AC005668.1-201ENST00000571142 476 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AC136443.5-201ENST00000603741 370 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 AC013437.2-201ENST00000639587 677 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 OR4G1P-203ENST00000641984 1631 ntBASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
CCDC112Q8NEF3 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.16□□□□□ -2.22
CCDC112Q8NEF3 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
CCDC112Q8NEF3 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
CCDC112Q8NEF3 SNORD3E-201ENST00000362899 217 ntBASIC1.16□□□□□ -2.22
CCDC112Q8NEF3 RNU1-22P-201ENST00000363334 158 ntBASIC1.16□□□□□ -2.22
CCDC112Q8NEF3 RNU6-1210P-201ENST00000363775 107 ntBASIC1.16□□□□□ -2.22
CCDC112Q8NEF3 RNU2-62P-201ENST00000410868 191 ntBASIC1.16□□□□□ -2.22
CCDC112Q8NEF3 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC1.16□□□□□ -2.22
CCDC112Q8NEF3 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 440.5 ms