Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.217-201ENST00000364214 105 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.262-201ENST00000364641 102 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-651P-201ENST00000411040 105 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 SETP5-201ENST00000437270 562 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 HMGB1P37-201ENST00000439613 609 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.641-201ENST00000459414 105 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AP000873.1-201ENST00000463987 400 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AC020593.1-201ENST00000507399 299 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 RNU7-143P-201ENST00000516781 65 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AC110491.1-201ENST00000562191 2010 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 MIR3144-201ENST00000579460 79 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AL451007.1-201ENST00000595491 289 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 KLKP1-201ENST00000595979 403 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AL359198.2-201ENST00000611836 194 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AC083809.1-201ENST00000615051 472 ntBASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.9□□□□□ -1.78
UBE3DQ7Z6J8 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
UBE3DQ7Z6J8 AL359854.1-201ENST00000614203 1594 ntBASIC3.9□□□□□ -1.78
UBE3DQ7Z6J8 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
UBE3DQ7Z6J8 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-600P-201ENST00000362524 99 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-873P-201ENST00000363833 107 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 Y_RNA.441-201ENST00000384123 112 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 MIR93-201ENST00000385024 80 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-1248P-201ENST00000391096 64 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 Y_RNA.597-201ENST00000410463 100 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 AC012306.1-201ENST00000423267 114 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 HMGN2P10-201ENST00000448085 265 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 MRPS10P1-201ENST00000448483 130 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 AC007215.1-201ENST00000464893 276 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 AC136624.4-201ENST00000573044 370 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 AC048347.1-201ENST00000624621 427 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 MIR6830-201ENST00000636015 70 ntBASIC3.9□□□□□ -1.79
UBE3DQ7Z6J8 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-1285P-201ENST00000363480 105 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 SNORA72.2-201ENST00000365028 127 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-81P-201ENST00000365608 104 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AC068538.1-201ENST00000376856 336 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-1310P-201ENST00000384153 107 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AL353748.1-201ENST00000440753 474 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 RPL26P9-201ENST00000457466 433 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 RN7SL604P-201ENST00000492589 296 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 RNU5F-8P-201ENST00000515941 111 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 IGKV2D-19-201ENST00000523346 262 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AC090897.2-201ENST00000581715 130 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 MIR5684-201ENST00000585074 65 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 AC068831.7-201ENST00000616954 363 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 MTND1P7-201ENST00000632801 297 ntBASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
UBE3DQ7Z6J8 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 ZNF204P-201ENST00000416749 2397 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 Y_RNA.8-201ENST00000362353 102 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 RNA5SP129-201ENST00000410276 118 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 AL451074.5-201ENST00000415894 435 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 RPS23P7-201ENST00000466210 444 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 MRPL49P2-201ENST00000521066 465 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 AP004242.1-201ENST00000533701 349 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 RPL21P9-201ENST00000556149 474 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 AC005255.1-201ENST00000593748 216 ntBASIC3.88□□□□□ -1.79
UBE3DQ7Z6J8 AC025946.2-201ENST00000603398 234 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms