Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-29P-201ENST00000384637 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-9-201ENST00000384776 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-33P-201ENST00000384793 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AL359672.1-201ENST00000442302 409 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AL441985.1-201ENST00000457727 251 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC117440.1-201ENST00000474107 571 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 MED28P2-201ENST00000475771 317 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RN7SL20P-201ENST00000488827 297 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RPS29P21-201ENST00000496272 170 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 GZMAP1-201ENST00000503054 631 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC116353.2-201ENST00000505332 712 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC018710.1-201ENST00000506509 158 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 MRPS36P2-201ENST00000512569 299 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU5F-8P-201ENST00000515941 111 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC100830.2-201ENST00000581636 240 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 OR1M4P-201ENST00000589199 287 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC010620.2-201ENST00000600135 313 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 VN1R107P-201ENST00000601784 209 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 CTHRC1P1-201ENST00000605383 469 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-85P-201ENST00000605989 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 RNU6-6P-201ENST00000606623 107 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AL121757.2-201ENST00000611223 313 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 AL136221.1-201ENST00000621449 509 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 ZNF658B-202ENST00000615961 3375 ntBASIC2.78□□□□□ -1.96
COL28A1Q2UY09 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.77□□□□□ -1.97
COL28A1Q2UY09 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.77□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.86-201ENST00000363020 111 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.212-201ENST00000364177 102 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 RNU6-1083P-201ENST00000384022 107 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 SNORA3.2-201ENST00000408221 125 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 RNU6-1148P-201ENST00000410992 104 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AL117339.3-201ENST00000418733 162 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 SAR1AP4-201ENST00000429225 591 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 RPL23AP58-201ENST00000440453 469 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AC133134.1-201ENST00000466800 359 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 RPL7P43-201ENST00000478876 753 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AP004217.1-201ENST00000480579 346 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.77□□□□□ -1.97
COL28A1Q2UY09 MTCO2P30-201ENST00000503662 364 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AC098799.2-201ENST00000509466 868 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 RNU6-323P-201ENST00000521915 107 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AP000763.2-201ENST00000540641 163 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 GLYCAM1-201ENST00000546596 285 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AL357078.3-201ENST00000607528 618 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL28A1Q2UY09 AL359198.2-201ENST00000611836 194 ntBASIC2.77□□□□□ -1.97
COL28A1Q2UY09 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL28A1Q2UY09 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AC073325.2-201ENST00000339545 159 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.164-201ENST00000363709 102 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 SNORA68.1-201ENST00000364537 132 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.279-201ENST00000364763 95 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 RNU6-851P-201ENST00000384565 107 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 MT-TL1-201ENST00000386347 75 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 MIR147B-201ENST00000390185 80 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AL513475.1-201ENST00000406602 315 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 RNA5SP274-201ENST00000410484 108 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 MTCO3P46-201ENST00000425787 232 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AC004383.1-201ENST00000438135 289 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 RPL7P12-201ENST00000446719 750 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AC023043.3-201ENST00000593113 385 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.76□□□□□ -1.97
COL28A1Q2UY09 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.76□□□□□ -1.97
COL28A1Q2UY09 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL28A1Q2UY09 AP006437.1-201ENST00000641440 3685 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 SNORD116-20-201ENST00000384529 92 ntBASIC2.75□□□□□ -1.97
COL28A1Q2UY09 RNU6-510P-201ENST00000391239 108 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms