Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AP000560.1-201ENST00000624150 1937 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
COL4A3Q01955 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A3Q01955 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
COL4A3Q01955 Y_RNA.27-201ENST00000362540 103 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 Y_RNA.84-201ENST00000363011 104 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 SNORD27-201ENST00000363981 72 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 RNU6-338P-201ENST00000383888 105 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 Y_RNA.785-201ENST00000384290 109 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 MIR514A1-201ENST00000385133 98 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
COL4A3Q01955 MTCYBP2-201ENST00000407745 171 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 RNA5SP296-201ENST00000410523 111 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A3Q01955 AC096920.1-201ENST00000423991 241 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 AL627311.1-201ENST00000431514 115 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A3Q01955 RPEP5-201ENST00000441137 268 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.34□□□□□ -1.87
COL4A3Q01955 RN7SKP210-201ENST00000459176 261 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 AL049874.1-201ENST00000489560 388 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A3Q01955 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A3Q01955 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A3Q01955 AC103996.1-201ENST00000555468 102 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.34□□□□□ -1.87
COL4A3Q01955 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A3Q01955 AC018692.3-201ENST00000623929 123 ntBASIC3.34□□□□□ -1.87
COL4A3Q01955 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.34□□□□□ -1.87
COL4A3Q01955 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.34□□□□□ -1.88
COL4A3Q01955 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL4A3Q01955 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
COL4A3Q01955 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
COL4A3Q01955 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A3Q01955 AP001148.1-201ENST00000624124 2359 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 Y_RNA.105-201ENST00000363182 111 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 MIR215-201ENST00000384858 110 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
COL4A3Q01955 RNU6-1203P-201ENST00000410703 110 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 RNU6-130P-201ENST00000411112 103 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A3Q01955 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A3Q01955 PRELID3BP1-201ENST00000457142 540 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 RPL23AP45-201ENST00000476406 468 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AL160314.1-201ENST00000490836 438 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A3Q01955 AC084851.1-201ENST00000529105 249 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AC068446.3-201ENST00000555285 382 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AL645944.1-201ENST00000603857 493 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AC010900.2-201ENST00000604508 210 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AC093732.2-201ENST00000607950 274 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
COL4A3Q01955 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A3Q01955 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A3Q01955 AC004925.1-201ENST00000624256 2706 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.33□□□□□ -1.88
COL4A3Q01955 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A3Q01955 AC018529.3-201ENST00000624212 2254 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A3Q01955 Y_RNA.238-201ENST00000364441 102 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 Y_RNA.245-201ENST00000364493 95 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 SNORA7.4-201ENST00000384249 137 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 Y_RNA.623-201ENST00000411128 95 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 PIGPP3-201ENST00000425307 415 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AC006028.1-201ENST00000438379 402 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 RPL37P4-201ENST00000448908 268 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AP002884.2-201ENST00000471647 395 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 RN7SKP132-201ENST00000516001 208 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AC109479.2-201ENST00000517842 174 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.33□□□□□ -1.88
COL4A3Q01955 AC009779.6-201ENST00000603972 165 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 uc_338.25-201ENST00000613756 156 ntBASIC3.33□□□□□ -1.88
COL4A3Q01955 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A3Q01955 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
COL4A3Q01955 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A3Q01955 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
COL4A3Q01955 Y_RNA.65-201ENST00000362846 100 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 SNORD50.1-201ENST00000362987 71 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
COL4A3Q01955 AP002088.1-201ENST00000382740 395 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 SNORD67-201ENST00000390833 111 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 MIR548H3-201ENST00000408771 118 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 RNU2-71P-201ENST00000411395 189 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 AC244098.2-201ENST00000422068 99 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 AC079780.1-201ENST00000428259 207 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 MTND3P9-201ENST00000429526 346 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 AL357552.1-201ENST00000445254 415 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 AC087190.1-201ENST00000484462 480 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 AC107032.1-201ENST00000485945 480 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.32□□□□□ -1.88
COL4A3Q01955 AC009314.1-201ENST00000603871 304 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.32□□□□□ -1.88
COL4A3Q01955 AP001282.2-201ENST00000616149 309 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 AC137590.2-201ENST00000619709 240 ntBASIC3.32□□□□□ -1.88
COL4A3Q01955 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.32□□□□□ -1.88
COL4A3Q01955 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A3Q01955 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.32□□□□□ -1.88
COL4A3Q01955 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
COL4A3Q01955 LINC01355-201ENST00000566551 5444 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 AL356489.2-201ENST00000566968 3528 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms