Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZNF72P-201ENST00000425869 1908 ntBASIC1.72□□□□□ -2.13
RFX3P48380 RNU4-21P-201ENST00000362802 126 ntBASIC1.72□□□□□ -2.13
RFX3P48380 RNU6-1097P-201ENST00000363586 107 ntBASIC1.72□□□□□ -2.13
RFX3P48380 SNORA16.1-201ENST00000364597 132 ntBASIC1.72□□□□□ -2.13
RFX3P48380 RNU6-384P-201ENST00000364900 104 ntBASIC1.72□□□□□ -2.13
RFX3P48380 SNORA40.18-201ENST00000391200 128 ntBASIC1.72□□□□□ -2.13
RFX3P48380 MIR1283-2-201ENST00000408621 87 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.72□□□□□ -2.13
RFX3P48380 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.72□□□□□ -2.13
RFX3P48380 AL591806.2-201ENST00000433122 173 ntBASIC1.72□□□□□ -2.13
RFX3P48380 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.72□□□□□ -2.13
RFX3P48380 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.72□□□□□ -2.13
RFX3P48380 GPR143P-201ENST00000434155 205 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AC104058.1-201ENST00000448028 297 ntBASIC1.72□□□□□ -2.13
RFX3P48380 GAPDHP17-201ENST00000449858 1001 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.72□□□□□ -2.13
RFX3P48380 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.72□□□□□ -2.13
RFX3P48380 RPL23AP63-201ENST00000498752 471 ntBASIC1.72□□□□□ -2.13
RFX3P48380 RNA5SP182-201ENST00000516064 82 ntBASIC1.72□□□□□ -2.13
RFX3P48380 RNU2-44P-201ENST00000516795 194 ntBASIC1.72□□□□□ -2.13
RFX3P48380 Y_RNA.717-201ENST00000517106 92 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.72□□□□□ -2.13
RFX3P48380 OR5AL2P-201ENST00000532185 920 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.72□□□□□ -2.13
RFX3P48380 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.72□□□□□ -2.13
RFX3P48380 AC110588.1-201ENST00000559699 137 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.72□□□□□ -2.13
RFX3P48380 AL078605.1-201ENST00000603529 500 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AC005034.5-201ENST00000604219 466 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AL670379.4-201ENST00000605279 254 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AL121992.2-201ENST00000606262 256 ntBASIC1.72□□□□□ -2.13
RFX3P48380 Z82243.1-201ENST00000609432 473 ntBASIC1.72□□□□□ -2.13
RFX3P48380 RMST_4.1-201ENST00000616886 107 ntBASIC1.72□□□□□ -2.13
RFX3P48380 AC090517.3-201ENST00000625170 141 ntBASIC1.72□□□□□ -2.13
RFX3P48380 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.72□□□□□ -2.13
RFX3P48380 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
RFX3P48380 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.72□□□□□ -2.13
RFX3P48380 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.71□□□□□ -2.14
RFX3P48380 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
RFX3P48380 FGF7P2-201ENST00000332473 296 ntBASIC1.71□□□□□ -2.14
RFX3P48380 SNORD115-7-201ENST00000365306 82 ntBASIC1.71□□□□□ -2.14
RFX3P48380 RNU6-108P-201ENST00000365558 107 ntBASIC1.71□□□□□ -2.14
RFX3P48380 SNORD116-20-201ENST00000384529 92 ntBASIC1.71□□□□□ -2.14
RFX3P48380 MIR583-201ENST00000384846 75 ntBASIC1.71□□□□□ -2.14
RFX3P48380 MT-TH-201ENST00000387441 69 ntBASIC1.71□□□□□ -2.14
RFX3P48380 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
RFX3P48380 SNORA40.19-201ENST00000390846 128 ntBASIC1.71□□□□□ -2.14
RFX3P48380 MIR1262-201ENST00000408276 93 ntBASIC1.71□□□□□ -2.14
RFX3P48380 MIR1289-2-201ENST00000408360 111 ntBASIC1.71□□□□□ -2.14
RFX3P48380 RNU2-32P-201ENST00000411193 191 ntBASIC1.71□□□□□ -2.14
RFX3P48380 RPL21P90-201ENST00000415692 466 ntBASIC1.71□□□□□ -2.14
RFX3P48380 MTND3P17-201ENST00000416968 344 ntBASIC1.71□□□□□ -2.14
RFX3P48380 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.71□□□□□ -2.14
RFX3P48380 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.71□□□□□ -2.14
RFX3P48380 RPS6P15-201ENST00000431996 751 ntBASIC1.71□□□□□ -2.14
RFX3P48380 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.71□□□□□ -2.14
RFX3P48380 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.71□□□□□ -2.14
RFX3P48380 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.71□□□□□ -2.14
RFX3P48380 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC1.71□□□□□ -2.14
RFX3P48380 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.71□□□□□ -2.14
RFX3P48380 AL121594.1-201ENST00000475906 575 ntBASIC1.71□□□□□ -2.14
RFX3P48380 Y_RNA.687-201ENST00000516558 91 ntBASIC1.71□□□□□ -2.14
RFX3P48380 SNORA43.2-201ENST00000516652 128 ntBASIC1.71□□□□□ -2.14
RFX3P48380 RNU6-1220P-201ENST00000517126 108 ntBASIC1.71□□□□□ -2.14
RFX3P48380 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.71□□□□□ -2.14
RFX3P48380 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.71□□□□□ -2.14
RFX3P48380 AP005639.2-201ENST00000527592 928 ntBASIC1.71□□□□□ -2.14
RFX3P48380 AP000763.2-201ENST00000540641 163 ntBASIC1.71□□□□□ -2.14
RFX3P48380 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.71□□□□□ -2.14
RFX3P48380 AC098848.2-201ENST00000588023 330 ntBASIC1.71□□□□□ -2.14
RFX3P48380 Z99289.3-201ENST00000605586 594 ntBASIC1.71□□□□□ -2.14
RFX3P48380 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.71□□□□□ -2.14
RFX3P48380 AC093648.1-201ENST00000623546 606 ntBASIC1.71□□□□□ -2.14
RFX3P48380 AC241585.2-209ENST00000638217 143 ntBASIC1.71□□□□□ -2.14
RFX3P48380 AL354685.2-201ENST00000448218 1447 ntBASIC1.71□□□□□ -2.14
RFX3P48380 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.7□□□□□ -2.14
RFX3P48380 Y_RNA.576-201ENST00000384781 102 ntBASIC1.7□□□□□ -2.14
RFX3P48380 SNORA26.9-201ENST00000391322 122 ntBASIC1.7□□□□□ -2.14
RFX3P48380 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
RFX3P48380 RNU2-23P-201ENST00000410545 195 ntBASIC1.7□□□□□ -2.14
RFX3P48380 OR6C66P-201ENST00000414917 930 ntBASIC1.7□□□□□ -2.14
RFX3P48380 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.7□□□□□ -2.14
RFX3P48380 AC074117.2-201ENST00000417130 397 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.7□□□□□ -2.14
RFX3P48380 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.7□□□□□ -2.14
RFX3P48380 AL445567.1-201ENST00000439121 144 ntBASIC1.7□□□□□ -2.14
RFX3P48380 RPL23AP6-201ENST00000446637 472 ntBASIC1.7□□□□□ -2.14
RFX3P48380 snoU13.14-201ENST00000459372 104 ntBASIC1.7□□□□□ -2.14
RFX3P48380 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.7□□□□□ -2.14
RFX3P48380 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.7□□□□□ -2.14
RFX3P48380 AC104806.1-201ENST00000508720 308 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AC104136.1-201ENST00000512969 394 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.7□□□□□ -2.14
RFX3P48380 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.7□□□□□ -2.14
RFX3P48380 AC137800.2-201ENST00000574375 120 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AC090897.2-201ENST00000581715 130 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AC245014.2-201ENST00000603689 287 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AC246785.4-201ENST00000605374 287 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AC063944.3-201ENST00000609969 533 ntBASIC1.7□□□□□ -2.14
RFX3P48380 AC004908.3-201ENST00000610248 625 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms