Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-546P-201ENST00000383991 107 ntBASIC0.14□□□□□ -2.39
CUX1P39880 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.14□□□□□ -2.39
CUX1P39880 AC002381.1-201ENST00000447049 280 ntBASIC0.14□□□□□ -2.39
CUX1P39880 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.14□□□□□ -2.39
CUX1P39880 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.14□□□□□ -2.39
CUX1P39880 RNU6-1092P-201ENST00000516955 87 ntBASIC0.14□□□□□ -2.39
CUX1P39880 AC007834.2-201ENST00000536310 343 ntBASIC0.14□□□□□ -2.39
CUX1P39880 AC025423.5-201ENST00000550230 219 ntBASIC0.14□□□□□ -2.39
CUX1P39880 AC004908.3-201ENST00000610248 625 ntBASIC0.14□□□□□ -2.39
CUX1P39880 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC0.14□□□□□ -2.39
CUX1P39880 MTCO1P18-201ENST00000455518 1419 ntBASIC0.13□□□□□ -2.39
CUX1P39880 RPL22P22-201ENST00000395439 379 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.13□□□□□ -2.39
CUX1P39880 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC0.13□□□□□ -2.39
CUX1P39880 RNU6-678P-201ENST00000516832 109 ntBASIC0.13□□□□□ -2.39
CUX1P39880 RNA5SP503-201ENST00000517047 117 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC0.13□□□□□ -2.39
CUX1P39880 AC091489.2-201ENST00000566263 604 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AC068205.3-201ENST00000636385 468 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AC090625.1-201ENST00000357130 210 ntBASIC0.13□□□□□ -2.39
CUX1P39880 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.13□□□□□ -2.39
CUX1P39880 MIR200A-201ENST00000384875 90 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AL353621.1-201ENST00000418219 243 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.13□□□□□ -2.39
CUX1P39880 AL121578.1-201ENST00000428051 892 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AL096829.2-201ENST00000446582 742 ntBASIC0.13□□□□□ -2.39
CUX1P39880 GAPDHP17-201ENST00000449858 1001 ntBASIC0.13□□□□□ -2.39
CUX1P39880 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.13□□□□□ -2.39
CUX1P39880 RPL30P1-201ENST00000488676 339 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AL160314.1-201ENST00000490836 438 ntBASIC0.13□□□□□ -2.39
CUX1P39880 RNU6-581P-201ENST00000516214 105 ntBASIC0.13□□□□□ -2.39
CUX1P39880 RNA5SP168-201ENST00000516642 112 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.13□□□□□ -2.39
CUX1P39880 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC0.13□□□□□ -2.39
CUX1P39880 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.13□□□□□ -2.39
CUX1P39880 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.13□□□□□ -2.39
CUX1P39880 RSL24D1P11-201ENST00000591045 491 ntBASIC0.13□□□□□ -2.39
CUX1P39880 RPL30P11-203ENST00000598995 310 ntBASIC0.13□□□□□ -2.39
CUX1P39880 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
CUX1P39880 AC093913.1-201ENST00000614178 329 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AC097372.5-201ENST00000623665 376 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AC106858.1-201ENST00000637497 429 ntBASIC0.13□□□□□ -2.39
CUX1P39880 AC092447.10-201ENST00000620607 1652 ntBASIC0.12□□□□□ -2.39
CUX1P39880 RNU6-543P-201ENST00000362576 108 ntBASIC0.12□□□□□ -2.39
CUX1P39880 CCNG1P1-201ENST00000406783 885 ntBASIC0.12□□□□□ -2.39
CUX1P39880 PPP1R11P2-201ENST00000423543 382 ntBASIC0.12□□□□□ -2.39
CUX1P39880 MTCO2P12-201ENST00000427426 682 ntBASIC0.12□□□□□ -2.39
CUX1P39880 PSMA6P3-201ENST00000428242 164 ntBASIC0.12□□□□□ -2.39
CUX1P39880 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC0.12□□□□□ -2.39
CUX1P39880 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.12□□□□□ -2.39
CUX1P39880 RPL23AP54-201ENST00000495129 419 ntBASIC0.12□□□□□ -2.39
CUX1P39880 RNU6-491P-201ENST00000516099 110 ntBASIC0.12□□□□□ -2.39
CUX1P39880 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC0.12□□□□□ -2.39
CUX1P39880 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC0.12□□□□□ -2.39
CUX1P39880 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC0.12□□□□□ -2.39
CUX1P39880 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.12□□□□□ -2.39
CUX1P39880 AC002545.1-201ENST00000592511 181 ntBASIC0.12□□□□□ -2.39
CUX1P39880 AC105129.3-201ENST00000605455 485 ntBASIC0.12□□□□□ -2.39
CUX1P39880 AL365434.2-201ENST00000607979 234 ntBASIC0.12□□□□□ -2.39
CUX1P39880 AC013476.2-201ENST00000614456 459 ntBASIC0.12□□□□□ -2.39
CUX1P39880 AL158163.2-201ENST00000619110 700 ntBASIC0.12□□□□□ -2.39
CUX1P39880 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.12□□□□□ -2.39
CUX1P39880 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.11□□□□□ -2.39
CUX1P39880 AL391994.1-201ENST00000254724 282 ntBASIC0.11□□□□□ -2.39
CUX1P39880 MIR421-201ENST00000365696 85 ntBASIC0.11□□□□□ -2.39
CUX1P39880 CCDC58P2-201ENST00000417131 366 ntBASIC0.11□□□□□ -2.39
CUX1P39880 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.11□□□□□ -2.39
CUX1P39880 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC0.11□□□□□ -2.39
CUX1P39880 AC007435.1-201ENST00000421086 415 ntBASIC0.11□□□□□ -2.39
CUX1P39880 AC092423.1-201ENST00000430165 186 ntBASIC0.11□□□□□ -2.39
CUX1P39880 AC114982.2-201ENST00000461396 358 ntBASIC0.11□□□□□ -2.39
CUX1P39880 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC0.11□□□□□ -2.39
CUX1P39880 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.11□□□□□ -2.39
CUX1P39880 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC0.11□□□□□ -2.39
CUX1P39880 AL355802.4-201ENST00000607635 548 ntBASIC0.11□□□□□ -2.39
CUX1P39880 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.11□□□□□ -2.39
CUX1P39880 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.11□□□□□ -2.39
CUX1P39880 AL590396.2-201ENST00000636511 1041 ntBASIC0.11□□□□□ -2.39
CUX1P39880 AC068647.2-201ENST00000637380 353 ntBASIC0.11□□□□□ -2.39
CUX1P39880 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.1□□□□□ -2.39
CUX1P39880 MIR101-1-201ENST00000362265 75 ntBASIC0.1□□□□□ -2.39
CUX1P39880 RNU6-23P-201ENST00000363283 107 ntBASIC0.1□□□□□ -2.39
CUX1P39880 RNU6-1339P-201ENST00000363574 91 ntBASIC0.1□□□□□ -2.39
CUX1P39880 RNA5SP493-201ENST00000364115 91 ntBASIC0.1□□□□□ -2.39
CUX1P39880 AL133475.1-201ENST00000404414 305 ntBASIC0.1□□□□□ -2.39
CUX1P39880 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.1□□□□□ -2.39
CUX1P39880 AL589872.1-201ENST00000426602 288 ntBASIC0.1□□□□□ -2.39
CUX1P39880 AC002429.1-201ENST00000437672 148 ntBASIC0.1□□□□□ -2.39
CUX1P39880 RPL7P43-201ENST00000478876 753 ntBASIC0.1□□□□□ -2.39
CUX1P39880 AC098869.1-201ENST00000481627 292 ntBASIC0.1□□□□□ -2.39
CUX1P39880 AC011005.2-201ENST00000487324 359 ntBASIC0.1□□□□□ -2.39
CUX1P39880 RNA5SP290-201ENST00000517133 127 ntBASIC0.1□□□□□ -2.39
CUX1P39880 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC0.1□□□□□ -2.39
CUX1P39880 AP001429.1-201ENST00000602568 530 ntBASIC0.1□□□□□ -2.39
CUX1P39880 AC017083.3-201ENST00000609955 700 ntBASIC0.1□□□□□ -2.39
CUX1P39880 MIR411-201ENST00000362239 96 ntBASIC0.09□□□□□ -2.39
CUX1P39880 RNU6-296P-201ENST00000384608 107 ntBASIC0.09□□□□□ -2.39
CUX1P39880 RPL21P111-201ENST00000418453 477 ntBASIC0.09□□□□□ -2.39
CUX1P39880 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.09□□□□□ -2.39
CUX1P39880 AC011406.1-201ENST00000512440 370 ntBASIC0.09□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms