Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AP004607.1-201ENST00000524456 203 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXD3P31249 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXD3P31249 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.71□□□□□ -1.98
HOXD3P31249 MIR5696-201ENST00000578474 85 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXD3P31249 MIR1244-1-201ENST00000612829 85 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXD3P31249 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXD3P31249 MIR1244-3-201ENST00000635744 85 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 MIR1244-2-201ENST00000636449 85 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 MIR1244-4-202ENST00000636813 85 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD3P31249 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD3P31249 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
HOXD3P31249 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXD3P31249 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD3P31249 RNU6-858P-201ENST00000362436 107 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 RNU6-227P-201ENST00000362865 103 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 SNORD56.1-201ENST00000362913 68 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 Y_RNA.133-201ENST00000363428 110 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 RNU6-450P-201ENST00000364654 107 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 RNU6-1280P-201ENST00000365211 107 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 RNU6-574P-201ENST00000384265 107 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 RNU6-1105P-201ENST00000384774 107 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 RNU2-23P-201ENST00000410545 195 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 RHEBP3-201ENST00000411920 351 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 AL358176.2-201ENST00000425769 204 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 AC005326.1-201ENST00000429197 123 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 MTND3P2-201ENST00000438452 342 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD3P31249 AL031659.1-201ENST00000447075 539 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 HMGN2P10-201ENST00000448085 265 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 MTND5P22-201ENST00000458380 195 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 MRPL42P6-201ENST00000486397 371 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXD3P31249 AC116655.1-201ENST00000508324 901 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD3P31249 AP000867.2-201ENST00000532468 320 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD3P31249 MRPS36P4-201ENST00000534436 298 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD3P31249 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD3P31249 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 AL138880.2-201ENST00000616214 239 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD3P31249 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXD3P31249 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD3P31249 MTND5P16-201ENST00000460269 1703 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 AC022336.2-201ENST00000568966 2538 ntBASIC2.7□□□□□ -1.98
HOXD3P31249 MTND5P9-201ENST00000503854 1755 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AC073073.2-201ENST00000609827 2578 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
HOXD3P31249 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXD3P31249 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXD3P31249 AC005592.1-201ENST00000566527 1640 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXD3P31249 ADAM3A-203ENST00000461344 2157 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXD3P31249 Y_RNA.111-201ENST00000363248 100 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RNU6-1309P-201ENST00000363305 108 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RNU6-595P-201ENST00000363944 107 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RNA5SP42-201ENST00000364278 115 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RNU6-283P-201ENST00000364788 107 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 MIR568-201ENST00000385036 95 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RNA5SP252-201ENST00000391131 119 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RNA5SP494-201ENST00000410653 129 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RPL23AP82-202ENST00000427528 469 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AL714022.1-201ENST00000439897 151 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD3P31249 OR2AQ1P-201ENST00000451972 200 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AC079354.2-201ENST00000453523 154 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AC006483.1-201ENST00000487308 313 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AC091874.1-201ENST00000511402 339 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RNU6-764P-201ENST00000516396 105 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AC009812.2-201ENST00000517657 457 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
HOXD3P31249 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD3P31249 AC010186.2-204ENST00000537668 439 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD3P31249 AC009318.2-201ENST00000610917 651 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AC008121.3-201ENST00000618726 433 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXD3P31249 ZNF826P-207ENST00000622273 1910 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 AL079305.1-201ENST00000623159 3008 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 MAPK10-322ENST00000641485 4530 ntBASIC2.69□□□□□ -1.98
HOXD3P31249 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXD3P31249 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD3P31249 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD3P31249 ZNF299P-201ENST00000406845 1804 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXD3P31249 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD3P31249 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD3P31249 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
HOXD3P31249 RNU6-874P-201ENST00000362390 105 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 RNU1-115P-201ENST00000365329 160 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 Y_RNA.577-201ENST00000384794 101 ntBASIC2.68□□□□□ -1.98
HOXD3P31249 AL138885.1-201ENST00000405921 675 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms