Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.53□□□□□ -2.16
USF1P22415 AL078605.1-201ENST00000603529 500 ntBASIC1.53□□□□□ -2.16
USF1P22415 AL136370.1-201ENST00000608166 691 ntBASIC1.53□□□□□ -2.16
USF1P22415 Z82243.1-201ENST00000609432 473 ntBASIC1.53□□□□□ -2.16
USF1P22415 AC026585.1-201ENST00000619582 524 ntBASIC1.53□□□□□ -2.16
USF1P22415 AC099654.13-201ENST00000639774 207 ntBASIC1.53□□□□□ -2.16
USF1P22415 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
USF1P22415 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
USF1P22415 Y_RNA.22-201ENST00000362492 102 ntBASIC1.52□□□□□ -2.17
USF1P22415 MIR1262-201ENST00000408276 93 ntBASIC1.52□□□□□ -2.17
USF1P22415 MIR1283-2-201ENST00000408621 87 ntBASIC1.52□□□□□ -2.17
USF1P22415 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.52□□□□□ -2.17
USF1P22415 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.52□□□□□ -2.17
USF1P22415 AL593851.1-201ENST00000426171 157 ntBASIC1.52□□□□□ -2.17
USF1P22415 ZNF114P1-201ENST00000453500 292 ntBASIC1.52□□□□□ -2.17
USF1P22415 SNORD13-201ENST00000459299 104 ntBASIC1.52□□□□□ -2.17
USF1P22415 PTP4A1P4-201ENST00000512479 322 ntBASIC1.52□□□□□ -2.17
USF1P22415 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.52□□□□□ -2.17
USF1P22415 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.52□□□□□ -2.17
USF1P22415 AP005639.2-201ENST00000527592 928 ntBASIC1.52□□□□□ -2.17
USF1P22415 RPL21P5-201ENST00000554662 472 ntBASIC1.52□□□□□ -2.17
USF1P22415 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.52□□□□□ -2.17
USF1P22415 AC012065.4-201ENST00000602445 679 ntBASIC1.52□□□□□ -2.17
USF1P22415 snoU13.31-201ENST00000607291 104 ntBASIC1.52□□□□□ -2.17
USF1P22415 AC027449.1-201ENST00000608890 407 ntBASIC1.52□□□□□ -2.17
USF1P22415 AC004908.3-201ENST00000610248 625 ntBASIC1.52□□□□□ -2.17
USF1P22415 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.52□□□□□ -2.17
USF1P22415 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.52□□□□□ -2.17
USF1P22415 RMST_7.1-201ENST00000621935 268 ntBASIC1.52□□□□□ -2.17
USF1P22415 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.52□□□□□ -2.17
USF1P22415 SNORD56.1-201ENST00000362913 68 ntBASIC1.51□□□□□ -2.17
USF1P22415 RNU6-179P-201ENST00000363350 107 ntBASIC1.51□□□□□ -2.17
USF1P22415 SNORD14D-201ENST00000384390 87 ntBASIC1.51□□□□□ -2.17
USF1P22415 MIR9-3-201ENST00000385084 90 ntBASIC1.51□□□□□ -2.17
USF1P22415 OR9R1P-201ENST00000412200 877 ntBASIC1.51□□□□□ -2.17
USF1P22415 SRIP3-201ENST00000413200 219 ntBASIC1.51□□□□□ -2.17
USF1P22415 RPL21P90-201ENST00000415692 466 ntBASIC1.51□□□□□ -2.17
USF1P22415 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
USF1P22415 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.51□□□□□ -2.17
USF1P22415 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.51□□□□□ -2.17
USF1P22415 RNU1-86P-201ENST00000516108 154 ntBASIC1.51□□□□□ -2.17
USF1P22415 RNU1-107P-201ENST00000516617 154 ntBASIC1.51□□□□□ -2.17
USF1P22415 RNU6-250P-201ENST00000516958 103 ntBASIC1.51□□□□□ -2.17
USF1P22415 RNU6-685P-201ENST00000517088 95 ntBASIC1.51□□□□□ -2.17
USF1P22415 AC022616.3-201ENST00000523940 148 ntBASIC1.51□□□□□ -2.17
USF1P22415 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.51□□□□□ -2.17
USF1P22415 DUXAP5-201ENST00000529668 529 ntBASIC1.51□□□□□ -2.17
USF1P22415 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.51□□□□□ -2.17
USF1P22415 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.51□□□□□ -2.17
USF1P22415 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.51□□□□□ -2.17
USF1P22415 MIR502-201ENST00000606349 86 ntBASIC1.51□□□□□ -2.17
USF1P22415 MIR8081-201ENST00000611533 95 ntBASIC1.51□□□□□ -2.17
USF1P22415 AC004223.4-201ENST00000612426 332 ntBASIC1.51□□□□□ -2.17
USF1P22415 AL159153.1-201ENST00000619688 317 ntBASIC1.51□□□□□ -2.17
USF1P22415 AC019226.2-201ENST00000625973 424 ntBASIC1.51□□□□□ -2.17
USF1P22415 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.5□□□□□ -2.17
USF1P22415 RNU6-457P-201ENST00000363999 107 ntBASIC1.5□□□□□ -2.17
USF1P22415 RNU6-944P-201ENST00000364023 107 ntBASIC1.5□□□□□ -2.17
USF1P22415 SNORA16.1-201ENST00000364597 132 ntBASIC1.5□□□□□ -2.17
USF1P22415 SNORA20.2-201ENST00000383922 131 ntBASIC1.5□□□□□ -2.17
USF1P22415 SNORA67.5-201ENST00000391036 107 ntBASIC1.5□□□□□ -2.17
USF1P22415 SNORA17.3-201ENST00000391159 129 ntBASIC1.5□□□□□ -2.17
USF1P22415 MIR1294-201ENST00000408503 142 ntBASIC1.5□□□□□ -2.17
USF1P22415 Y_RNA.598-201ENST00000410480 95 ntBASIC1.5□□□□□ -2.17
USF1P22415 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.5□□□□□ -2.17
USF1P22415 BX510359.4-201ENST00000423750 193 ntBASIC1.5□□□□□ -2.17
USF1P22415 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.5□□□□□ -2.17
USF1P22415 CALM2P2-201ENST00000428512 440 ntBASIC1.5□□□□□ -2.17
USF1P22415 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.5□□□□□ -2.17
USF1P22415 UBE2D3P4-201ENST00000441973 436 ntBASIC1.5□□□□□ -2.17
USF1P22415 EPS15P1-201ENST00000448836 336 ntBASIC1.5□□□□□ -2.17
USF1P22415 AL353752.1-201ENST00000454946 260 ntBASIC1.5□□□□□ -2.17
USF1P22415 RPL30P12-201ENST00000474666 353 ntBASIC1.5□□□□□ -2.17
USF1P22415 RPL30P1-201ENST00000488676 339 ntBASIC1.5□□□□□ -2.17
USF1P22415 MTCO3P9-201ENST00000506989 781 ntBASIC1.5□□□□□ -2.17
USF1P22415 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.5□□□□□ -2.17
USF1P22415 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.5□□□□□ -2.17
USF1P22415 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.5□□□□□ -2.17
USF1P22415 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.5□□□□□ -2.17
USF1P22415 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.5□□□□□ -2.17
USF1P22415 BNIP3P25-201ENST00000596023 559 ntBASIC1.5□□□□□ -2.17
USF1P22415 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.5□□□□□ -2.17
USF1P22415 AC091304.9-201ENST00000612091 226 ntBASIC1.5□□□□□ -2.17
USF1P22415 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.5□□□□□ -2.17
USF1P22415 RMST_4.1-201ENST00000616886 107 ntBASIC1.5□□□□□ -2.17
USF1P22415 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
USF1P22415 RNU11-3P-201ENST00000391111 133 ntBASIC1.49□□□□□ -2.17
USF1P22415 Z99497.1-201ENST00000421282 135 ntBASIC1.49□□□□□ -2.17
USF1P22415 EIF4EP2-201ENST00000422816 654 ntBASIC1.49□□□□□ -2.17
USF1P22415 TAF9P1-201ENST00000445421 515 ntBASIC1.49□□□□□ -2.17
USF1P22415 TAF9P2-201ENST00000454958 515 ntBASIC1.49□□□□□ -2.17
USF1P22415 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC1.49□□□□□ -2.17
USF1P22415 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.49□□□□□ -2.17
USF1P22415 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC1.49□□□□□ -2.17
USF1P22415 AC116562.3-201ENST00000506136 177 ntBASIC1.49□□□□□ -2.17
USF1P22415 MTCYBP40-201ENST00000509390 1135 ntBASIC1.49□□□□□ -2.17
USF1P22415 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.49□□□□□ -2.17
USF1P22415 AC068587.5-201ENST00000528506 175 ntBASIC1.49□□□□□ -2.17
USF1P22415 AC005771.1-201ENST00000585581 349 ntBASIC1.49□□□□□ -2.17
USF1P22415 VN1R80P-201ENST00000597126 338 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 167.8 ms