Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RN7SKP12-201ENST00000516275 143 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 RNA5SP281-201ENST00000516504 135 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 RNU2-44P-201ENST00000516795 194 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 RN7SL176P-201ENST00000580352 264 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 AL442128.1-201ENST00000615151 90 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 RNA5SP439-201ENST00000617595 124 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
COL9A1P20849 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL9A1P20849 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL9A1P20849 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL9A1P20849 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5□□□□□ -1.61
COL9A1P20849 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5□□□□□ -1.61
COL9A1P20849 FAM35BP-202ENST00000497389 3337 ntBASIC5□□□□□ -1.61
COL9A1P20849 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5□□□□□ -1.61
COL9A1P20849 AP001273.1-201ENST00000624493 3152 ntBASIC5□□□□□ -1.61
COL9A1P20849 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL9A1P20849 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL9A1P20849 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL9A1P20849 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5□□□□□ -1.61
COL9A1P20849 RNU6-508P-201ENST00000363231 103 ntBASIC5□□□□□ -1.61
COL9A1P20849 SNORA18.2-201ENST00000383865 132 ntBASIC5□□□□□ -1.61
COL9A1P20849 Y_RNA.528-201ENST00000384575 108 ntBASIC5□□□□□ -1.61
COL9A1P20849 MIR570-201ENST00000384917 97 ntBASIC5□□□□□ -1.61
COL9A1P20849 SNORA48.4-201ENST00000391089 134 ntBASIC5□□□□□ -1.61
COL9A1P20849 RNA5SP136-201ENST00000410906 107 ntBASIC5□□□□□ -1.61
COL9A1P20849 SCARNA10-201ENST00000459255 330 ntBASIC5□□□□□ -1.61
COL9A1P20849 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5□□□□□ -1.61
COL9A1P20849 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC5□□□□□ -1.61
COL9A1P20849 RNU6-1337P-201ENST00000516525 95 ntBASIC5□□□□□ -1.61
COL9A1P20849 AC107918.3-201ENST00000533272 382 ntBASIC5□□□□□ -1.61
COL9A1P20849 AC005972.2-201ENST00000604690 348 ntBASIC5□□□□□ -1.61
COL9A1P20849 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5□□□□□ -1.61
COL9A1P20849 AC007256.1-201ENST00000392253 2765 ntBASIC5□□□□□ -1.61
COL9A1P20849 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL9A1P20849 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
COL9A1P20849 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC5□□□□□ -1.61
COL9A1P20849 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.99□□□□□ -1.61
COL9A1P20849 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.99□□□□□ -1.61
COL9A1P20849 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.99□□□□□ -1.61
COL9A1P20849 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL9A1P20849 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
COL9A1P20849 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL9A1P20849 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL9A1P20849 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
COL9A1P20849 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.99□□□□□ -1.61
COL9A1P20849 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.99□□□□□ -1.61
COL9A1P20849 Y_RNA.49-201ENST00000362714 112 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 Y_RNA.220-201ENST00000364244 109 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 MIR195-201ENST00000385194 87 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 MIR548B-201ENST00000385247 97 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 SNORA26-201ENST00000391286 122 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 MIR1263-201ENST00000408324 86 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 AL135786.1-201ENST00000415892 214 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 NDUFB4P6-201ENST00000436819 366 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 RN7SKP43-201ENST00000516173 320 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 SNORA18.4-201ENST00000516440 124 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 RN7SL290P-201ENST00000578661 300 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 RNU6-94P-201ENST00000607728 107 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 AC140479.6-201ENST00000633535 357 ntBASIC4.99□□□□□ -1.61
COL9A1P20849 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.99□□□□□ -1.61
COL9A1P20849 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL9A1P20849 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
COL9A1P20849 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL9A1P20849 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
COL9A1P20849 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL9A1P20849 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL9A1P20849 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL9A1P20849 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
COL9A1P20849 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL9A1P20849 AC125336.1-201ENST00000508893 2827 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL9A1P20849 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC4.98□□□□□ -1.61
COL9A1P20849 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC4.98□□□□□ -1.61
COL9A1P20849 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
COL9A1P20849 RNA5SP119-201ENST00000362715 117 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 Y_RNA.52-201ENST00000362760 96 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 SNORA51.10-201ENST00000384418 136 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 MIR891A-201ENST00000401237 79 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 AL133547.1-201ENST00000448546 220 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.98□□□□□ -1.61
COL9A1P20849 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.98□□□□□ -1.61
COL9A1P20849 AP003730.1-201ENST00000524605 285 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 AC019176.2-201ENST00000611579 315 ntBASIC4.98□□□□□ -1.61
COL9A1P20849 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL9A1P20849 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC4.98□□□□□ -1.61
COL9A1P20849 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL9A1P20849 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL9A1P20849 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.98□□□□□ -1.61
COL9A1P20849 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC4.97□□□□□ -1.61
COL9A1P20849 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
COL9A1P20849 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC4.97□□□□□ -1.61
COL9A1P20849 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.97□□□□□ -1.61
COL9A1P20849 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.97□□□□□ -1.61
COL9A1P20849 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL9A1P20849 RNU6-1014P-201ENST00000383940 103 ntBASIC4.97□□□□□ -1.61
COL9A1P20849 MIR624-201ENST00000385217 97 ntBASIC4.97□□□□□ -1.61
COL9A1P20849 MIR493-201ENST00000385254 89 ntBASIC4.97□□□□□ -1.61
COL9A1P20849 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL9A1P20849 RNA5SP241-201ENST00000391326 114 ntBASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms