Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC-0.15□□□□□ -2.43
HMGA1P17096 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC-0.15□□□□□ -2.43
HMGA1P17096 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC-0.15□□□□□ -2.43
HMGA1P17096 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC-0.15□□□□□ -2.43
HMGA1P17096 AL590229.1-201ENST00000603497 542 ntBASIC-0.15□□□□□ -2.43
HMGA1P17096 HMGB1P51-201ENST00000605166 638 ntBASIC-0.15□□□□□ -2.43
HMGA1P17096 AC004067.1-201ENST00000608733 700 ntBASIC-0.15□□□□□ -2.43
HMGA1P17096 RNA5SP62-201ENST00000363457 110 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 RNA5SP493-201ENST00000364115 91 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 MIR329-2-201ENST00000385029 84 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 RPL22P22-201ENST00000395439 379 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 RPL26P27-201ENST00000414397 437 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 C8orf59P1-201ENST00000429930 303 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 AC015724.1-201ENST00000478577 156 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 BLNK-209ENST00000495266 440 ntTSL 5 BASIC-0.16□□□□□ -2.44
HMGA1P17096 AC113410.1-201ENST00000505029 247 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 AC021146.8-201ENST00000507455 733 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 RNU6-581P-201ENST00000516214 105 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 RNA5SP285-201ENST00000516619 119 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 AC093249.1-201ENST00000567049 203 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 MIR4431-201ENST00000579990 94 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 AP002906.1-201ENST00000603405 233 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 AC012557.2-201ENST00000605919 418 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 AC090517.2-201ENST00000614966 680 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 MTND1P37-201ENST00000636562 264 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 U6.107-201ENST00000637108 79 ntBASIC-0.16□□□□□ -2.44
HMGA1P17096 RNU6-546P-201ENST00000383991 107 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 AL359704.1-201ENST00000411586 781 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 MTCYBP38-201ENST00000417160 1123 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 AL392003.1-201ENST00000434394 243 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC-0.17□□□□□ -2.44
HMGA1P17096 AL606662.1-201ENST00000445763 553 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 HMGB1P30-201ENST00000492455 606 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 RNA5SP437-201ENST00000517249 129 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 AC092354.1-201ENST00000606057 376 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 AC018926.1-201ENST00000616335 435 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 AC009269.6-201ENST00000621778 588 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 MIR6759-201ENST00000638110 65 ntBASIC-0.17□□□□□ -2.44
HMGA1P17096 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.17□□□□□ -2.44
HMGA1P17096 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC-0.18□□□□□ -2.44
HMGA1P17096 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC-0.18□□□□□ -2.44
HMGA1P17096 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 AL121978.1-201ENST00000402778 359 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 RPL22P18-201ENST00000417197 377 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC-0.18□□□□□ -2.44
HMGA1P17096 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC-0.18□□□□□ -2.44
HMGA1P17096 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC-0.18□□□□□ -2.44
HMGA1P17096 MTCYBP1-201ENST00000454315 1119 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC-0.18□□□□□ -2.44
HMGA1P17096 RPL23AP54-201ENST00000495129 419 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC-0.18□□□□□ -2.44
HMGA1P17096 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.18□□□□□ -2.44
HMGA1P17096 AC011406.1-201ENST00000512440 370 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 RNU5A-4P-201ENST00000516588 111 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 RNU4-18P-201ENST00000516751 149 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 RNU6-678P-201ENST00000516832 109 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC-0.18□□□□□ -2.44
HMGA1P17096 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC-0.18□□□□□ -2.44
HMGA1P17096 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC-0.18□□□□□ -2.44
HMGA1P17096 AC005951.2-201ENST00000576282 495 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC-0.18□□□□□ -2.44
HMGA1P17096 AC130454.1-201ENST00000622948 401 ntBASIC-0.18□□□□□ -2.44
HMGA1P17096 RNU6-969P-201ENST00000383900 105 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 RNU6-167P-201ENST00000384292 106 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 RNA5SP222-201ENST00000411039 105 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC-0.19□□□□□ -2.44
HMGA1P17096 AC099677.2-201ENST00000436385 175 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 RAD1P2-201ENST00000446414 663 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 RNA5SP290-201ENST00000517133 127 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGA1P17096 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGA1P17096 MIR3169-201ENST00000578032 83 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 AL356157.2-201ENST00000605122 111 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC-0.19□□□□□ -2.44
HMGA1P17096 AC024060.1-201ENST00000607052 494 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 AL357075.2-201ENST00000614906 189 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 RMST_4.1-201ENST00000616886 107 ntBASIC-0.19□□□□□ -2.44
HMGA1P17096 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC-0.19□□□□□ -2.44
HMGA1P17096 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC-0.2□□□□□ -2.44
HMGA1P17096 SNORA32.1-201ENST00000364514 115 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 RNA5SP259-201ENST00000365541 109 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 RNU6-160P-201ENST00000384591 107 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC-0.2□□□□□ -2.44
HMGA1P17096 MTCO3P18-201ENST00000440206 761 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 AC002381.1-201ENST00000447049 280 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 AC092001.1-201ENST00000453012 261 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 HMGB1P29-201ENST00000505659 499 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC-0.2□□□□□ -2.44
HMGA1P17096 MTCO3P7-201ENST00000510008 774 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC-0.2□□□□□ -2.44
HMGA1P17096 MTCO2P15-201ENST00000532655 656 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 MIR3678-201ENST00000578455 94 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC-0.2□□□□□ -2.44
HMGA1P17096 AC012065.4-201ENST00000602445 679 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 AL353778.1-201ENST00000603149 408 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 AC100812.1-201ENST00000607622 580 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 AL360219.1-201ENST00000610230 366 ntBASIC-0.2□□□□□ -2.44
HMGA1P17096 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC-0.2□□□□□ -2.44
HMGA1P17096 RNU6-778P-201ENST00000363269 103 ntBASIC-0.21□□□□□ -2.44
HMGA1P17096 RNU6-1274P-201ENST00000384557 107 ntBASIC-0.21□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms