Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CKS1BP7-201ENST00000522230 235 ntBASIC3.61□□□□□ -1.83
CBX4O00257 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.61□□□□□ -1.83
CBX4O00257 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.61□□□□□ -1.83
CBX4O00257 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.61□□□□□ -1.83
CBX4O00257 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.61□□□□□ -1.83
CBX4O00257 MIR1244-1-201ENST00000612829 85 ntBASIC3.61□□□□□ -1.83
CBX4O00257 AL078596.1-201ENST00000624856 447 ntBASIC3.61□□□□□ -1.83
CBX4O00257 MIR1244-3-201ENST00000635744 85 ntBASIC3.61□□□□□ -1.83
CBX4O00257 MIR1244-2-201ENST00000636449 85 ntBASIC3.61□□□□□ -1.83
CBX4O00257 MIR1244-4-202ENST00000636813 85 ntBASIC3.61□□□□□ -1.83
CBX4O00257 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.61□□□□□ -1.83
CBX4O00257 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.61□□□□□ -1.83
CBX4O00257 AL353746.1-201ENST00000566293 6881 ntBASIC3.61□□□□□ -1.83
CBX4O00257 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CBX4O00257 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CBX4O00257 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.6□□□□□ -1.83
CBX4O00257 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CBX4O00257 RNA5SP42-201ENST00000364278 115 ntBASIC3.6□□□□□ -1.83
CBX4O00257 RNU6-142P-201ENST00000384019 107 ntBASIC3.6□□□□□ -1.83
CBX4O00257 Y_RNA.424-201ENST00000384063 103 ntBASIC3.6□□□□□ -1.83
CBX4O00257 Y_RNA.527-201ENST00000384573 102 ntBASIC3.6□□□□□ -1.83
CBX4O00257 MIR128-1-201ENST00000384921 82 ntBASIC3.6□□□□□ -1.83
CBX4O00257 U3.39-201ENST00000408569 239 ntBASIC3.6□□□□□ -1.83
CBX4O00257 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.6□□□□□ -1.83
CBX4O00257 AC096649.2-201ENST00000416186 393 ntBASIC3.6□□□□□ -1.83
CBX4O00257 AC006989.1-201ENST00000427212 131 ntBASIC3.6□□□□□ -1.83
CBX4O00257 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.6□□□□□ -1.83
CBX4O00257 RPL21P10-201ENST00000463521 490 ntBASIC3.6□□□□□ -1.83
CBX4O00257 SNRPGP7-201ENST00000469016 106 ntBASIC3.6□□□□□ -1.83
CBX4O00257 AC025518.1-201ENST00000479856 347 ntBASIC3.6□□□□□ -1.83
CBX4O00257 RNU7-175P-201ENST00000515915 61 ntBASIC3.6□□□□□ -1.83
CBX4O00257 SNORA70.14-201ENST00000516205 110 ntBASIC3.6□□□□□ -1.83
CBX4O00257 AC009812.2-201ENST00000517657 457 ntBASIC3.6□□□□□ -1.83
CBX4O00257 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.6□□□□□ -1.83
CBX4O00257 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.6□□□□□ -1.83
CBX4O00257 AC060766.3-201ENST00000591442 263 ntBASIC3.6□□□□□ -1.83
CBX4O00257 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.6□□□□□ -1.83
CBX4O00257 MTND5P16-201ENST00000460269 1703 ntBASIC3.6□□□□□ -1.83
CBX4O00257 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CBX4O00257 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.6□□□□□ -1.83
CBX4O00257 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.6□□□□□ -1.83
CBX4O00257 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CBX4O00257 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CBX4O00257 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
CBX4O00257 RBBP8P1-201ENST00000449447 1844 ntBASIC3.59□□□□□ -1.83
CBX4O00257 RNU4-42P-201ENST00000364738 142 ntBASIC3.59□□□□□ -1.83
CBX4O00257 RNU4-9P-201ENST00000364951 139 ntBASIC3.59□□□□□ -1.83
CBX4O00257 Y_RNA.389-201ENST00000383924 113 ntBASIC3.59□□□□□ -1.83
CBX4O00257 RNU6-748P-201ENST00000384648 107 ntBASIC3.59□□□□□ -1.83
CBX4O00257 RNA5SP390-201ENST00000410191 113 ntBASIC3.59□□□□□ -1.83
CBX4O00257 RNU6-101P-201ENST00000410323 104 ntBASIC3.59□□□□□ -1.83
CBX4O00257 RNA5SP494-201ENST00000410653 129 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.59□□□□□ -1.83
CBX4O00257 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.59□□□□□ -1.83
CBX4O00257 SETP5-201ENST00000437270 562 ntBASIC3.59□□□□□ -1.83
CBX4O00257 MTND3P2-201ENST00000438452 342 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AL031659.1-201ENST00000447075 539 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AL353752.1-201ENST00000454946 260 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AC104564.1-201ENST00000493028 407 ntBASIC3.59□□□□□ -1.83
CBX4O00257 RNU2-27P-201ENST00000516185 142 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AC091144.1-201ENST00000519573 138 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AC025281.1-201ENST00000567026 265 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CBX4O00257 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.59□□□□□ -1.83
CBX4O00257 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AC091152.3-201ENST00000604227 325 ntBASIC3.59□□□□□ -1.83
CBX4O00257 MIR4272-201ENST00000635924 64 ntBASIC3.59□□□□□ -1.83
CBX4O00257 CEP170P1-201ENST00000502249 4587 ntBASIC3.59□□□□□ -1.83
CBX4O00257 AC010889.1-201ENST00000566193 2666 ntBASIC3.59□□□□□ -1.83
CBX4O00257 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.59□□□□□ -1.83
CBX4O00257 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.58□□□□□ -1.84
CBX4O00257 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
CBX4O00257 RNU1-105P-201ENST00000363470 161 ntBASIC3.58□□□□□ -1.84
CBX4O00257 RNU6-1141P-201ENST00000364520 107 ntBASIC3.58□□□□□ -1.84
CBX4O00257 RNU6-283P-201ENST00000364788 107 ntBASIC3.58□□□□□ -1.84
CBX4O00257 SNORD32A-201ENST00000364805 84 ntBASIC3.58□□□□□ -1.84
CBX4O00257 Y_RNA.455-201ENST00000384230 98 ntBASIC3.58□□□□□ -1.84
CBX4O00257 RNU6-1222P-201ENST00000384615 107 ntBASIC3.58□□□□□ -1.84
CBX4O00257 MIR147B-201ENST00000390185 80 ntBASIC3.58□□□□□ -1.84
CBX4O00257 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
CBX4O00257 RPL23AP95-201ENST00000426806 265 ntBASIC3.58□□□□□ -1.84
CBX4O00257 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.58□□□□□ -1.84
CBX4O00257 AL353705.4-201ENST00000449661 238 ntBASIC3.58□□□□□ -1.84
CBX4O00257 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.58□□□□□ -1.84
CBX4O00257 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.58□□□□□ -1.84
CBX4O00257 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.58□□□□□ -1.84
CBX4O00257 RNU6-1046P-201ENST00000516538 107 ntBASIC3.58□□□□□ -1.84
CBX4O00257 Y_RNA.706-201ENST00000516933 99 ntBASIC3.58□□□□□ -1.84
CBX4O00257 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.58□□□□□ -1.84
CBX4O00257 AC007375.1-201ENST00000554513 578 ntBASIC3.58□□□□□ -1.84
CBX4O00257 AC104581.2-201ENST00000572227 430 ntBASIC3.58□□□□□ -1.84
CBX4O00257 AC100812.1-201ENST00000607622 580 ntBASIC3.58□□□□□ -1.84
CBX4O00257 AC008121.3-201ENST00000618726 433 ntBASIC3.58□□□□□ -1.84
CBX4O00257 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.58□□□□□ -1.84
CBX4O00257 AC091812.1-201ENST00000432235 1948 ntBASIC3.58□□□□□ -1.84
CBX4O00257 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms