Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL513043.1-201ENST00000439124 535 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 NIPA2P5-201ENST00000452282 464 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 RPL30P15-201ENST00000457129 321 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 RPL9P9-202ENST00000466501 579 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC097473.1-201ENST00000508142 408 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC021739.1-201ENST00000559631 174 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC005899.2-201ENST00000584353 90 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC008739.3-201ENST00000603262 127 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC080078.3-201ENST00000605407 463 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AL627309.6-201ENST00000606857 840 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC009229.3-201ENST00000608056 282 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 AC012314.7-201ENST00000619693 93 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 MIR3199-2-201ENST00000636243 86 ntBASIC3.52□□□□□ -1.85
LIMCH1Q9UPQ0 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 ADAM3A-203ENST00000461344 2157 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-306P-201ENST00000384617 107 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 RPS29P13-201ENST00000402041 169 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC236972.1-201ENST00000433225 199 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 CYCSP32-201ENST00000440548 321 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AL358232.1-201ENST00000448030 501 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.639-201ENST00000458981 102 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC008571.1-201ENST00000467232 300 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC027575.1-201ENST00000481064 460 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 RPS29P20-201ENST00000489592 171 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC005741.1-201ENST00000511094 432 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 ACA59.1-201ENST00000515966 143 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 SNORA43.2-201ENST00000516652 128 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC009314.1-201ENST00000603871 304 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 AC134503.1-201ENST00000633048 54 ntBASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.51□□□□□ -1.85
LIMCH1Q9UPQ0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.128-201ENST00000363391 112 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 SNORA63-201ENST00000363450 132 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-1280P-201ENST00000365211 107 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 RNU1-100P-201ENST00000365255 165 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 SNORD42.2-201ENST00000365570 69 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AL513475.1-201ENST00000406602 315 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 USP9YP30-201ENST00000430729 455 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 PRSS3P4-201ENST00000453323 162 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AC034236.1-201ENST00000469891 373 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 RN7SL601P-201ENST00000471221 293 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AC117440.1-201ENST00000474107 571 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 SMURF2P1-201ENST00000514992 481 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.670-201ENST00000516255 105 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-1153P-201ENST00000516760 105 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AC103996.1-201ENST00000555468 102 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 MIR5004-201ENST00000579078 107 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AC011494.1-201ENST00000596454 237 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AC024220.1-201ENST00000603675 484 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AC005046.1-201ENST00000608515 625 ntBASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.5□□□□□ -1.85
LIMCH1Q9UPQ0 AC110774.1-201ENST00000623567 2018 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-942P-201ENST00000363002 107 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-310P-201ENST00000384655 107 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 MIR7-3-201ENST00000384898 110 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 AL451074.5-201ENST00000415894 435 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 USMG5P1-201ENST00000425964 177 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 AL133396.1-201ENST00000432048 687 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 RPS29P6-201ENST00000438196 145 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 AC133134.1-201ENST00000466800 359 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 RPL7P49-201ENST00000471402 708 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 RPS29P2-201ENST00000479278 136 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 RN7SL504P-201ENST00000494496 287 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 AC116655.1-201ENST00000508324 901 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 AC093303.1-201ENST00000514549 295 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 CR383656.8-201ENST00000549046 145 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms