Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 uc_338.34-201ENST00000617467 174 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 RMST_7.1-201ENST00000621935 268 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.56□□□□□ -2
CPSF3Q9UKF6 MTND4P14-201ENST00000435799 1354 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
CPSF3Q9UKF6 AL109809.4-201ENST00000603520 2185 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 RNU6-858P-201ENST00000362436 107 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 RNU6-486P-201ENST00000363116 107 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 SNORA67.1-201ENST00000364749 141 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 Y_RNA.324-201ENST00000365165 102 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 U8.8-201ENST00000365399 135 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 Y_RNA.399-201ENST00000383955 105 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 RNU1-52P-201ENST00000384190 164 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 AL445529.1-201ENST00000398713 389 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 AL606923.1-201ENST00000406616 190 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 RNU6-648P-201ENST00000410190 107 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 MTND3P21-201ENST00000433774 331 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 MED28P2-201ENST00000475771 317 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 RNA5SP112-201ENST00000515937 99 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 RNA5SP24-201ENST00000516478 95 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 RNU6-314P-201ENST00000516574 104 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 SNORA25.17-201ENST00000517184 124 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 MIR5194-201ENST00000582634 120 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 MIR5007-201ENST00000583098 95 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC025165.5-201ENST00000602802 578 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC002044.1-201ENST00000606707 158 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC026585.1-201ENST00000619582 524 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 AC024581.2-201ENST00000619986 252 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 Z69720.2-201ENST00000624755 279 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.55□□□□□ -2
CPSF3Q9UKF6 ZNF271P-202ENST00000465539 1970 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CPSF3Q9UKF6 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CPSF3Q9UKF6 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CPSF3Q9UKF6 RNU4-20P-201ENST00000365601 151 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 RAP1BP3-201ENST00000407180 549 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.54□□□□□ -2
CPSF3Q9UKF6 AL139413.1-201ENST00000421309 217 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 BX276092.3-201ENST00000424182 230 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC2.54□□□□□ -2
CPSF3Q9UKF6 FABP5P14-201ENST00000437273 393 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.54□□□□□ -2
CPSF3Q9UKF6 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.54□□□□□ -2
CPSF3Q9UKF6 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.54□□□□□ -2
CPSF3Q9UKF6 DYNLL1P5-201ENST00000467158 270 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 RNA5SP401-201ENST00000515920 127 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 SNORA43.2-201ENST00000516652 128 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.54□□□□□ -2
CPSF3Q9UKF6 MTND4P7-201ENST00000523876 130 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 AL138976.2-201ENST00000563989 694 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 TPRKBP2-201ENST00000565969 475 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 AC105245.1-201ENST00000581934 244 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 AC123912.5-201ENST00000605470 343 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 AC244517.12-201ENST00000623581 663 ntBASIC2.54□□□□□ -2
CPSF3Q9UKF6 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.54□□□□□ -2
CPSF3Q9UKF6 RNA5SP126-201ENST00000365092 109 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 DEFA7P-201ENST00000382676 285 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 RNU6-483P-201ENST00000384088 108 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 RNU4-53P-201ENST00000410828 140 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 AC003685.2-201ENST00000422795 395 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 RPS3AP44-201ENST00000425466 790 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 RPL30P4-201ENST00000429309 333 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 HMGB1P31-201ENST00000437242 427 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 AC018634.1-201ENST00000437554 401 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 RNU7-167P-201ENST00000459160 62 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 SNORA25.11-201ENST00000515935 105 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 RNU5B-3P-201ENST00000516601 115 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 AP005902.1-201ENST00000521358 186 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 AL118558.2-201ENST00000556294 238 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 AC104237.2-201ENST00000612456 443 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 AL590808.1-201ENST00000618696 141 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 RBBP8P1-201ENST00000449447 1844 ntBASIC2.53□□□□□ -2
CPSF3Q9UKF6 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2
CPSF3Q9UKF6 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.53□□□□□ -2
CPSF3Q9UKF6 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 MIR6073-201ENST00000352083 89 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 RNU6-78P-201ENST00000362897 107 ntBASIC2.52□□□□□ -2.01
CPSF3Q9UKF6 RNU6-266P-201ENST00000364225 107 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms