Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS28Q9UK41 DLGAP5P1-201ENST00000430307 464 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS28Q9UK41 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS28Q9UK41 AL161788.1-201ENST00000441805 169 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.66□□□□□ -1.98
VPS28Q9UK41 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
VPS28Q9UK41 MIR4424-201ENST00000585257 86 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 AL355297.2-201ENST00000604792 129 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
VPS28Q9UK41 HULC.1-201ENST00000612720 240 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
VPS28Q9UK41 AC015540.1-201ENST00000615828 501 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 AC008121.3-201ENST00000618726 433 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
VPS28Q9UK41 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
VPS28Q9UK41 RNU6-655P-201ENST00000362858 107 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 SNORA69-201ENST00000383895 132 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 CALM2P3-201ENST00000400429 449 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 RNU6-1245P-201ENST00000411130 106 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 AC011816.1-201ENST00000441346 546 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 AC007969.2-201ENST00000441891 191 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 snoU13.14-201ENST00000459372 104 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 SRIP1-201ENST00000489235 288 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 CCDC34P1-201ENST00000507441 517 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 RNA5SP401-201ENST00000515920 127 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 RNU4-29P-201ENST00000515943 174 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 AL512310.1-201ENST00000548639 172 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 AC245505.1-201ENST00000556398 224 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 AC093249.1-201ENST00000567049 203 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 APOOP1-201ENST00000604695 592 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 MIR6817-201ENST00000615588 66 ntBASIC2.65□□□□□ -1.99
VPS28Q9UK41 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS28Q9UK41 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS28Q9UK41 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS28Q9UK41 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
VPS28Q9UK41 RNU6-529P-201ENST00000363383 104 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 RNU6-1210P-201ENST00000363775 107 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 RNA5SP68-201ENST00000363885 119 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 DEFA7P-201ENST00000382676 285 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 RNU1-52P-201ENST00000384190 164 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 MIR95-201ENST00000385072 81 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 AC007064.1-201ENST00000412238 351 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 MORF4L1P6-201ENST00000418771 268 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 USP9YP20-201ENST00000419224 558 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 AL121601.2-201ENST00000438019 707 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS28Q9UK41 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS28Q9UK41 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.64□□□□□ -1.99
VPS28Q9UK41 RPL30P12-201ENST00000474666 353 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 AL121594.1-201ENST00000475906 575 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS28Q9UK41 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.64□□□□□ -1.99
VPS28Q9UK41 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.64□□□□□ -1.99
VPS28Q9UK41 Y_RNA.693-201ENST00000516641 110 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 RNU1-104P-201ENST00000517280 175 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 CYCSP27-201ENST00000527643 293 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS28Q9UK41 AC090115.3-201ENST00000553218 849 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 MIR4446-201ENST00000578505 67 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 MIR5194-201ENST00000582634 120 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 AC097372.5-201ENST00000623665 376 ntBASIC2.64□□□□□ -1.99
VPS28Q9UK41 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.64□□□□□ -1.99
VPS28Q9UK41 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS28Q9UK41 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS28Q9UK41 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 Y_RNA.318-201ENST00000365131 97 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 RNA5SP219-201ENST00000390940 113 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 RNA5SP210-201ENST00000391034 120 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS28Q9UK41 AC124916.1-201ENST00000444020 547 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 RPS27P27-201ENST00000498779 255 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS28Q9UK41 AC009646.1-201ENST00000510455 318 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS28Q9UK41 SNORA48.11-201ENST00000517015 89 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS28Q9UK41 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS28Q9UK41 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS28Q9UK41 COPS8P3-201ENST00000526024 482 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 AC243972.3-201ENST00000539655 198 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 AC087241.4-201ENST00000612441 480 ntBASIC2.63□□□□□ -1.99
VPS28Q9UK41 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS28Q9UK41 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS28Q9UK41 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS28Q9UK41 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS28Q9UK41 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS28Q9UK41 Y_RNA.40-201ENST00000362645 93 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 RNA5SP393-201ENST00000363423 117 ntBASIC2.62□□□□□ -1.99
VPS28Q9UK41 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 158.2 ms