Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 RNU6-142P-201ENST00000384019 107 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 Y_RNA.551-201ENST00000384661 102 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 MIR1193-201ENST00000408109 78 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 RN7SKP156-201ENST00000410308 342 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 BPY2DP-201ENST00000422208 265 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 AC073910.1-201ENST00000445047 438 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 RN7SL132P-201ENST00000478131 296 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 AP006245.1-201ENST00000522549 120 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 MIR3149-201ENST00000584629 83 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 RNVU1-4-201ENST00000612985 164 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 AC138627.2-201ENST00000624202 601 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 MIR3199-2-201ENST00000636243 86 ntBASIC3.22□□□□□ -1.89
VSX1Q9NZR4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
VSX1Q9NZR4 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
VSX1Q9NZR4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.47-201ENST00000362697 108 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.123-201ENST00000363338 102 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.193-201ENST00000363979 102 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 RNU6-487P-201ENST00000365430 104 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.618-201ENST00000410949 107 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC074117.2-201ENST00000417130 397 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 DPH3P2-201ENST00000422618 250 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC092423.1-201ENST00000430165 186 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC012308.1-201ENST00000451232 178 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 SSXP4-201ENST00000451349 245 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC091179.1-201ENST00000461606 579 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 RPS26P21-201ENST00000475397 348 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 RNU6-1143P-201ENST00000516125 104 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 RNU6-928P-201ENST00000516876 104 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AL161670.1-201ENST00000554348 137 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AL391261.3-201ENST00000557194 520 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC021739.1-201ENST00000559631 174 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 MIR4503-201ENST00000582187 83 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 MIR5188-201ENST00000583467 113 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 RPS29P30-201ENST00000600975 111 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC137590.2-201ENST00000619709 240 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC090617.7-201ENST00000623952 126 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC138305.3-201ENST00000624988 240 ntBASIC3.21□□□□□ -1.9
VSX1Q9NZR4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
VSX1Q9NZR4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC068647.1-201ENST00000489539 2265 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 RNU6-270P-201ENST00000364131 105 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 U3.13-201ENST00000364804 214 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 SNORD116-20-201ENST00000384529 92 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 Y_RNA.574-201ENST00000384766 95 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 RNA5SP390-201ENST00000410191 113 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 MTCO3P8-201ENST00000453691 755 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 U8.20-201ENST00000459445 131 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 RNU2-27P-201ENST00000516185 142 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 SNORD19.2-201ENST00000516978 73 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC040926.1-201ENST00000530195 238 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC006600.1-201ENST00000572529 153 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC009163.5-201ENST00000575421 637 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 MIR5685-201ENST00000579080 79 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 VN1R85P-201ENST00000601587 426 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 HSPE1P7-201ENST00000604681 321 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC019159.1-201ENST00000605094 187 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 U2.1-201ENST00000618978 145 ntBASIC3.2□□□□□ -1.9
VSX1Q9NZR4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VSX1Q9NZR4 AC009541.1-201ENST00000438279 2662 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 169.7 ms