Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 OR4G1P-203ENST00000641984 1631 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 Y_RNA.38-201ENST00000362617 102 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 RNU6-1090P-201ENST00000364065 94 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 RNU6-534P-201ENST00000364877 106 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 MIR181B1-201ENST00000385240 110 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 SNORD37.1-201ENST00000390968 65 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 RNA5SP210-201ENST00000391034 120 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 RPS4XP7-201ENST00000406274 780 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 MIR548F1-201ENST00000408667 84 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 POLHP1-201ENST00000411806 470 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 USP9YP20-201ENST00000419224 558 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 ERLEC1P1-201ENST00000433806 578 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AL441985.1-201ENST00000457727 251 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AC008571.1-201ENST00000467232 300 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 MRPS36P2-201ENST00000512569 299 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 SNORA14.1-201ENST00000516113 141 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 RNU6-581P-201ENST00000516214 105 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 MTND1P35-201ENST00000526739 508 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AC023050.3-201ENST00000541142 333 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AC078814.3-201ENST00000553036 491 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AC009163.5-201ENST00000575421 637 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 MIR5583-1-201ENST00000580941 59 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 OR1M4P-201ENST00000589199 287 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AL670379.10-201ENST00000604330 253 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AL670379.9-201ENST00000605428 253 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 AC104458.1-201ENST00000608243 463 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 MIR3529-201ENST00000637713 78 ntBASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
CCDC3Q9BQI4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RNA5SP289-201ENST00000362332 137 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 U8.2-201ENST00000363156 134 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 Y_RNA.167-201ENST00000363735 109 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RNU6-522P-201ENST00000364497 107 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 Y_RNA.256-201ENST00000364594 104 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RNU4-66P-201ENST00000365199 138 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 Y_RNA.453-201ENST00000384223 109 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RNU6-843P-201ENST00000384454 104 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 MIR592-201ENST00000384959 97 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 FTH1P15-201ENST00000406984 280 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 SNORA3.2-201ENST00000408221 125 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 OR9R1P-201ENST00000412200 877 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RPS15AP7-201ENST00000439294 405 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 GSTA11P-201ENST00000452866 669 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC013470.1-201ENST00000453438 462 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC233279.1-201ENST00000455300 423 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RPS27AP9-201ENST00000477681 438 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RPL7P43-201ENST00000478876 753 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RPL21P99-201ENST00000480369 423 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 MRPL42P6-201ENST00000486397 371 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 GZMAP1-201ENST00000503054 631 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 MTCYBP40-201ENST00000509390 1135 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RNU6-189P-201ENST00000516120 101 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 Y_RNA.687-201ENST00000516558 91 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 RN7SKP40-201ENST00000517211 242 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC109479.2-201ENST00000517842 174 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 MTND4LP26-201ENST00000518144 282 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 MTCO3P13-201ENST00000577757 781 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 SNORA59B-202ENST00000578183 701 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC103810.1-201ENST00000579873 453 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC002553.4-201ENST00000616896 331 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC026585.1-201ENST00000619582 524 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 AC080100.1-201ENST00000624239 5356 ntBASIC2.46□□□□□ -2.02
CCDC3Q9BQI4 MTND5P30-201ENST00000452896 1731 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 RNU6-266P-201ENST00000364225 107 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 RNU6-877P-201ENST00000383868 107 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 MIR518C-201ENST00000384822 101 ntBASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC3Q9BQI4 AC092427.1-202ENST00000430569 476 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms