Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU6-1207P-201ENST00000384343 107 ntBASIC-0.67□□□□□ -2.52
VPS13AQ96RL7 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.67□□□□□ -2.52
VPS13AQ96RL7 RNU6-747P-201ENST00000390928 104 ntBASIC-0.67□□□□□ -2.52
VPS13AQ96RL7 RNU6-241P-201ENST00000391148 104 ntBASIC-0.67□□□□□ -2.52
VPS13AQ96RL7 AC114755.3-201ENST00000481111 251 ntBASIC-0.67□□□□□ -2.52
VPS13AQ96RL7 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC-0.67□□□□□ -2.52
VPS13AQ96RL7 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC-0.67□□□□□ -2.52
VPS13AQ96RL7 RNY4P28-201ENST00000365281 93 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 RNU6-756P-201ENST00000383997 107 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 SNORD83B-201ENST00000386745 93 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 RNY4P36-201ENST00000391116 96 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 RPL21P66-201ENST00000426566 466 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 MTCO3P43-201ENST00000440974 771 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 HMGB1P30-201ENST00000492455 606 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 CASP1-212ENST00000531166 300 ntTSL 5 BASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 AC022432.1-201ENST00000595739 310 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 Y_RNA.533-201ENST00000384596 114 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 MIR200A-201ENST00000384875 90 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 MIR325-201ENST00000385260 98 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 SNORD71-201ENST00000411292 86 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 CASP3P1-201ENST00000446037 609 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 AC018868.1-201ENST00000491307 315 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 RNU6-1278P-201ENST00000516130 107 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 SNORA70.22-201ENST00000517160 124 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 AC027288.2-201ENST00000553028 243 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 MIR3666-201ENST00000607845 111 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 FTX_3.1-201ENST00000610451 147 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 MIR1246-201ENST00000636535 73 ntBASIC-0.68□□□□□ -2.52
VPS13AQ96RL7 Y_RNA.117-201ENST00000363294 101 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 Y_RNA.439-201ENST00000384119 94 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 NCOR1P1-202ENST00000486162 291 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 AP003392.2-201ENST00000527269 208 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 SNRPGP20-201ENST00000604477 205 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 RNU6-24P-201ENST00000384440 107 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 BRK1P2-201ENST00000442875 223 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 BX248409.1-201ENST00000455497 255 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 RNU7-159P-201ENST00000459284 62 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 RN7SKP19-201ENST00000516016 252 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 AC110792.4-201ENST00000609843 298 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 SNORD33-201ENST00000362761 85 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 NDUFA5P10-201ENST00000432147 357 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 AC091860.1-201ENST00000505723 432 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 AC025588.4-201ENST00000615802 908 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 AL359697.1-201ENST00000624879 587 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 AC019226.1-201ENST00000625666 515 ntBASIC-0.69□□□□□ -2.52
VPS13AQ96RL7 UBE2D3P2-201ENST00000424409 445 ntBASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 AL391597.1-201ENST00000618707 694 ntBASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 MIR4788-201ENST00000639104 80 ntBASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 MTND1P20-201ENST00000430341 950 ntBASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 MTCO3P18-201ENST00000440206 761 ntBASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 AC022960.3-201ENST00000619794 441 ntBASIC-0.7□□□□□ -2.52
VPS13AQ96RL7 MIR942-201ENST00000401111 86 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC092685.1-201ENST00000447960 1243 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC025678.1-201ENST00000567861 338 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC025588.2-201ENST00000604851 466 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 OR5T3-201ENST00000303059 1023 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 RNU6-1155P-201ENST00000363554 107 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 MTCO2P20-201ENST00000437339 673 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 BUD31P2-201ENST00000449374 300 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 HMGB1P38-201ENST00000490557 577 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC074344.1-201ENST00000512823 224 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 CIR1P1-201ENST00000524055 1133 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC005261.5-201ENST00000596280 355 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC012065.4-201ENST00000602445 679 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AL138880.1-201ENST00000405824 642 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC016065.2-201ENST00000514530 444 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AL133241.1-201ENST00000556832 487 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AL357094.1-201ENST00000603845 844 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 BNIP3P31-201ENST00000604515 566 ntBASIC-0.71□□□□□ -2.52
VPS13AQ96RL7 AC005832.2-201ENST00000538921 1430 ntBASIC-0.72□□□□□ -2.52
VPS13AQ96RL7 SNORA36.2-201ENST00000384004 127 ntBASIC-0.72□□□□□ -2.52
VPS13AQ96RL7 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.72□□□□□ -2.52
VPS13AQ96RL7 RNU6-220P-201ENST00000390919 107 ntBASIC-0.72□□□□□ -2.52
VPS13AQ96RL7 RNU2-3P-201ENST00000410144 191 ntBASIC-0.72□□□□□ -2.52
VPS13AQ96RL7 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC-0.72□□□□□ -2.52
VPS13AQ96RL7 FABP5P4-201ENST00000437203 171 ntBASIC-0.72□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms