| HOOK3 | Q86VS8 | Y_RNA.159-201 | ENST00000363674 | 87 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RNU1-91P-201 | ENST00000364746 | 163 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | Y_RNA.324-201 | ENST00000365165 | 102 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | RNU2-29P-201 | ENST00000410423 | 189 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC009158.1-206 | ENST00000417476 | 454 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | MTCO2P34-201 | ENST00000421994 | 607 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | LINC02336-201 | ENST00000434117 | 330 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC009238.1-201 | ENST00000442165 | 424 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC009237.6-201 | ENST00000446969 | 424 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | snoU13.14-201 | ENST00000459372 | 104 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC079382.1-201 | ENST00000493346 | 557 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC008413.1-201 | ENST00000511864 | 177 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC010493.1-201 | ENST00000513479 | 292 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC117532.1-201 | ENST00000514638 | 323 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC105417.1-201 | ENST00000514691 | 285 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC021698.1-201 | ENST00000524858 | 716 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC118273.2-201 | ENST00000532092 | 465 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC093249.1-201 | ENST00000567049 | 203 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC073648.5-201 | ENST00000603502 | 305 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AP001596.2-201 | ENST00000608410 | 312 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | AC022418.1-201 | ENST00000624118 | 445 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | SRP54-214 | ENST00000630962 | 162 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.03 | | |
| HOOK3 | Q86VS8 | PTPRQ-208 | ENST00000614701 | 8289 nt | APPRIS P1 TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | SNX16-212 | ENST00000615066 | 1918 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | CSNK1G3-202 | ENST00000360683 | 4047 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.34 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | CEP57L1-216 | ENST00000521522 | 2259 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | ANKAR-201 | ENST00000313581 | 4391 nt | APPRIS P1 TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | LRRC69-201 | ENST00000343709 | 720 nt | TSL 2 BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-655P-201 | ENST00000362858 | 107 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | OR5H15-201 | ENST00000383696 | 930 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-393P-201 | ENST00000384475 | 107 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-1127P-201 | ENST00000384580 | 107 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | MIR561-201 | ENST00000385216 | 97 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC004870.3-202 | ENST00000412996 | 432 nt | TSL 3 BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | BTF3L4P1-201 | ENST00000413813 | 468 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AL356277.2-201 | ENST00000421318 | 441 nt | TSL 2 BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | MTCO2P16-201 | ENST00000436962 | 677 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AL121594.1-201 | ENST00000475906 | 575 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RPS27P21-201 | ENST00000486977 | 252 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | LINC02100-201 | ENST00000512978 | 238 nt | TSL 3 BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RN7SKP298-201 | ENST00000515950 | 94 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AP005435.4-201 | ENST00000529514 | 284 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | IMMP1LP2-201 | ENST00000552954 | 492 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RSL24D1P11-201 | ENST00000591045 | 491 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC078795.2-201 | ENST00000602835 | 1252 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC008536.2-201 | ENST00000607284 | 349 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC009509.4-201 | ENST00000619202 | 509 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC005609.4-201 | ENST00000625071 | 447 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC090582.1-201 | ENST00000636321 | 199 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | ARHGAP15-202 | ENST00000409869 | 2968 nt | TSL 5 BASIC | 2.33 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-1210P-201 | ENST00000363775 | 107 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-1303P-201 | ENST00000364841 | 107 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | SNORD116-9-201 | ENST00000384000 | 95 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-1032P-201 | ENST00000384100 | 107 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU5A-6P-201 | ENST00000384136 | 116 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-1103P-201 | ENST00000384150 | 107 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | SNORD116-3-201 | ENST00000384287 | 95 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-434P-201 | ENST00000384376 | 107 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | SNORD116-7-201 | ENST00000384404 | 95 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | SNORD116-5-201 | ENST00000384462 | 95 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | CDK8P2-201 | ENST00000415020 | 547 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | SRIP2-201 | ENST00000428470 | 166 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | INTS6L-AS1-201 | ENST00000430820 | 398 nt | TSL 3 BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC007285.2-201 | ENST00000433088 | 518 nt | TSL 3 BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC018634.1-201 | ENST00000437554 | 401 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | ODF2L-216 | ENST00000486215 | 311 nt | TSL 2 BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RPL23AP49-201 | ENST00000492925 | 468 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | MTCO3P7-201 | ENST00000510008 | 774 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC008892.1-201 | ENST00000511861 | 384 nt | TSL 3 BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | MIR514B-201 | ENST00000516774 | 80 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RN7SKP219-201 | ENST00000516825 | 296 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-586P-201 | ENST00000517265 | 104 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC018554.1-202 | ENST00000565133 | 444 nt | TSL 3 BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC006362.1-201 | ENST00000567392 | 174 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC010620.1-201 | ENST00000601088 | 1102 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | C8orf59-207 | ENST00000611854 | 563 nt | APPRIS P1 TSL 2 BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AL161423.1-201 | ENST00000613700 | 262 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | C3orf49-203 | ENST00000616659 | 876 nt | APPRIS ALT2 TSL 5 BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC007792.1-201 | ENST00000623023 | 402 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | U4.7-201 | ENST00000638126 | 106 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC002543.1-201 | ENST00000299783 | 1954 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | KPNA2P1-201 | ENST00000458289 | 1591 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | CYSLTR1-203 | ENST00000614798 | 2681 nt | APPRIS P1 TSL 1 (best) BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | APCS-201 | ENST00000255040 | 926 nt | APPRIS P1 TSL 1 (best) BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | Y_RNA.40-201 | ENST00000362645 | 93 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | Y_RNA.480-201 | ENST00000384364 | 102 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | SNORD70.1-201 | ENST00000391007 | 85 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AL591034.2-201 | ENST00000402839 | 359 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | SNORA11.2-201 | ENST00000408318 | 127 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC011243.1-201 | ENST00000420184 | 415 nt | TSL 3 BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AIMP1P2-201 | ENST00000425294 | 312 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC073464.1-201 | ENST00000429823 | 534 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AL451060.1-203 | ENST00000431307 | 362 nt | TSL 3 BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AL592309.2-201 | ENST00000444647 | 607 nt | TSL 5 BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | PRPS1P1-201 | ENST00000445305 | 876 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AL360221.1-201 | ENST00000445989 | 335 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU6-717P-201 | ENST00000459076 | 104 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | AC079140.3-201 | ENST00000511111 | 550 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU2-69P-201 | ENST00000516061 | 100 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| HOOK3 | Q86VS8 | RNU7-193P-201 | ENST00000516723 | 65 nt | BASIC | 2.31 | □□□□□ -2.04 | | |