Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 Y_RNA.653-201ENST00000459091 95 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AC096576.1-201ENST00000489014 359 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AC116337.1-201ENST00000509680 687 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AC096745.1-201ENST00000509945 370 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AC025423.5-201ENST00000550230 219 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 CYCSP39-201ENST00000565821 309 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 AL451007.1-201ENST00000595491 289 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS53Q5VIR6 FAM35CP-201ENST00000554755 2470 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 MTND4P27-201ENST00000450813 1354 ntBASIC3.49□□□□□ -1.85
VPS53Q5VIR6 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 MIR412-201ENST00000362142 91 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.146-201ENST00000363549 102 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.162-201ENST00000363683 102 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 DYNLT3P1-201ENST00000378574 347 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 MIR888-201ENST00000401186 77 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 RPL5P18-201ENST00000406671 891 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AL451074.5-201ENST00000415894 435 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AL590632.1-201ENST00000424289 371 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 NDUFB1P2-201ENST00000449477 176 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.631-201ENST00000459607 101 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 RPS29P12-201ENST00000460178 152 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AC011005.2-201ENST00000487324 359 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 MTCYBP40-201ENST00000509390 1135 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AC093303.1-201ENST00000514549 295 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 MIR892C-201ENST00000516410 77 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 H3F3AP1-201ENST00000559984 334 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 MIR3171-201ENST00000584270 74 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AC133104.2-201ENST00000615272 193 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS53Q5VIR6 AC092435.3-201ENST00000565538 3654 ntBASIC3.48□□□□□ -1.85
VPS53Q5VIR6 MTND5P10-201ENST00000603719 1809 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS53Q5VIR6 AC138393.1-203ENST00000327086 343 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS53Q5VIR6 MIR369-201ENST00000362155 70 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 RNU1-35P-201ENST00000362782 153 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 SNORD3E-201ENST00000362899 217 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.197-201ENST00000364004 102 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 RNU1-140P-201ENST00000365040 165 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 Y_RNA.324-201ENST00000365165 102 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 SNORA75B-201ENST00000384053 137 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 SNORA18.3-201ENST00000384122 132 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 RNU6-474P-201ENST00000384243 107 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 MIR559-201ENST00000385188 96 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 RNU6-293P-201ENST00000411259 106 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 EEF1A1P41-201ENST00000414667 207 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 AC092436.3-201ENST00000511788 257 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 RNU1-86P-201ENST00000516108 154 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 RNU1-107P-201ENST00000516617 154 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 RNU1-54P-201ENST00000517181 120 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS53Q5VIR6 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS53Q5VIR6 MIR4506-201ENST00000584693 77 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 SNRPGP17-201ENST00000603780 214 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS53Q5VIR6 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS53Q5VIR6 AC099654.7-201ENST00000635788 2127 ntBASIC3.47□□□□□ -1.85
VPS53Q5VIR6 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 MTND5P7-201ENST00000413558 1798 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 SNORD62.1-201ENST00000362541 86 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 RNU6-1329P-201ENST00000365664 107 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 RNA5SP354-201ENST00000391247 136 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 RN7SKP123-201ENST00000410732 291 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 HMGB1P9-201ENST00000429856 646 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 SNRPEP9-201ENST00000436794 238 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 MTND4P19-201ENST00000446659 478 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 AC026782.1-201ENST00000512952 449 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 SCGB1D5P-201ENST00000515134 247 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 RNA5SP385-201ENST00000515947 110 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 AL391261.3-201ENST00000557194 520 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 RNU6-85P-201ENST00000605989 107 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 AC090115.4-201ENST00000609970 188 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 MIR6128-201ENST00000615528 109 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 AL669831.3-213ENST00000636676 183 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 AC000403.1-201ENST00000613696 3585 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS53Q5VIR6 KPNA2P1-201ENST00000458289 1591 ntBASIC3.46□□□□□ -1.86
VPS53Q5VIR6 MIR181B1-201ENST00000385240 110 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms