Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.29□□□□□ -2.36
CHD9Q3L8U1 RNA5SP291-201ENST00000517222 105 ntBASIC0.29□□□□□ -2.36
CHD9Q3L8U1 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.29□□□□□ -2.36
CHD9Q3L8U1 MIR4661-201ENST00000582720 75 ntBASIC0.29□□□□□ -2.36
CHD9Q3L8U1 AL158211.4-201ENST00000606988 584 ntBASIC0.29□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.35-201ENST00000362601 101 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 RNA5SP361-201ENST00000362686 118 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 MIR618-201ENST00000385287 98 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 PIGPP2-201ENST00000411569 458 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 MTCYBP32-201ENST00000427945 1084 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.28□□□□□ -2.36
CHD9Q3L8U1 GPM6BP2-201ENST00000432046 144 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AC027119.1-201ENST00000440877 241 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 MTCO1P44-201ENST00000441935 243 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 PGBD4P5-201ENST00000445958 426 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 GPM6BP1-201ENST00000446387 144 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 OR6C5P-201ENST00000452388 923 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 CYP2C59P-201ENST00000457790 269 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AC018868.1-201ENST00000491307 315 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 NRON-201ENST00000517270 370 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AL390208.1-201ENST00000605885 644 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
CHD9Q3L8U1 snoU2_19.1-201ENST00000362361 80 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 Y_RNA.25-201ENST00000362528 102 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 SNORA51.10-201ENST00000384418 136 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.28□□□□□ -2.36
CHD9Q3L8U1 RNU6-1300P-201ENST00000391046 108 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 SNRPEP9-201ENST00000436794 238 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.28□□□□□ -2.36
CHD9Q3L8U1 SNORA31.22-201ENST00000517204 135 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.28□□□□□ -2.36
CHD9Q3L8U1 LARP7P2-201ENST00000575306 125 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AC010133.1-201ENST00000615809 842 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AC024581.2-201ENST00000619986 252 ntBASIC0.28□□□□□ -2.36
CHD9Q3L8U1 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.28□□□□□ -2.36
CHD9Q3L8U1 RNU5E-8P-201ENST00000363502 116 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 U3.8-201ENST00000363675 217 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 MIR100-201ENST00000385259 80 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC127391.1-201ENST00000411737 98 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 MTCYBP38-201ENST00000417160 1123 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC012308.1-201ENST00000451232 178 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC0.27□□□□□ -2.37
CHD9Q3L8U1 RN7SKP88-201ENST00000516847 250 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC109329.1-201ENST00000518744 317 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.27□□□□□ -2.37
CHD9Q3L8U1 MIR3937-201ENST00000580135 106 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 RSL24D1P11-201ENST00000591045 491 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC068620.3-201ENST00000602749 560 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 7SK.8-201ENST00000612110 250 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 7SK.11-201ENST00000615477 250 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 7SK.13-201ENST00000622040 250 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.27□□□□□ -2.37
CHD9Q3L8U1 RNU6-252P-201ENST00000363232 107 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 RNU6-432P-201ENST00000384196 109 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 Y_RNA.476-201ENST00000384347 108 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 MIR604-201ENST00000384880 94 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 MTCO2P31-201ENST00000402702 684 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 RPS15AP9-201ENST00000439856 381 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.27□□□□□ -2.37
CHD9Q3L8U1 snoU13.8-201ENST00000458890 104 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 RNA5SP67-201ENST00000516422 131 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC233702.2-202ENST00000562547 291 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 ROCK1P1-201ENST00000573767 549 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC010900.2-201ENST00000604508 210 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 RMST_4.1-201ENST00000616886 107 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC130454.1-201ENST00000622948 401 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC019226.1-201ENST00000625666 515 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC0.27□□□□□ -2.37
CHD9Q3L8U1 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
CHD9Q3L8U1 SNORA4.3-201ENST00000365564 137 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 BTF3L4P2-201ENST00000392798 346 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AL591034.2-201ENST00000402839 359 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 VPS26BP1-201ENST00000417155 755 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 ELOCP14-201ENST00000428070 331 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 ELOCP7-201ENST00000439968 331 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 MEMO1P3-201ENST00000459811 302 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC009950.2-201ENST00000636548 183 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 SGO1P1-201ENST00000603525 1447 ntBASIC0.27□□□□□ -2.37
CHD9Q3L8U1 AC023934.1-201ENST00000574529 2389 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 RNU1-39P-201ENST00000383897 165 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 Y_RNA.447-201ENST00000384184 113 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 Y_RNA.468-201ENST00000384298 102 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 Y_RNA.548-201ENST00000384656 105 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AL133264.1-201ENST00000407157 562 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.26□□□□□ -2.37
CHD9Q3L8U1 MTND5P8-201ENST00000449817 1083 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AC112492.4-201ENST00000456549 352 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 RNU7-59P-201ENST00000459101 61 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AP001324.2-201ENST00000461163 319 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 AL049874.1-201ENST00000489560 388 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 CYCTP-201ENST00000504253 315 ntBASIC0.26□□□□□ -2.37
CHD9Q3L8U1 SNORA31.4-201ENST00000516049 129 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms