Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA4Q00056 RNU6-1280P-201ENST00000365211 107 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 SNORA51.11-201ENST00000384442 131 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 RNA5SP171-201ENST00000391071 115 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 SNORA48.7-201ENST00000391302 135 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 SAR1AP2-201ENST00000392696 594 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 RPL21P1-201ENST00000399532 476 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 MIR190B-201ENST00000401119 79 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 MTHFD2P2-201ENST00000407725 247 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 AC074117.2-201ENST00000417130 397 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 OSTCP8-201ENST00000445117 448 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 HMGN2P10-201ENST00000448085 265 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXA4Q00056 RN7SKP210-201ENST00000459176 261 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXA4Q00056 AC106707.2-201ENST00000484182 374 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 MRPL42P6-201ENST00000486397 371 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 FTH1P9-201ENST00000513251 355 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 RN7SKP18-201ENST00000516005 275 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 CR383656.8-201ENST00000549046 145 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 AC021739.1-201ENST00000559631 174 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXA4Q00056 MYL12BP1-201ENST00000569826 507 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.98□□□□□ -1.93
HOXA4Q00056 AC010928.2-201ENST00000588017 287 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.98□□□□□ -1.93
HOXA4Q00056 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXA4Q00056 AC007792.1-201ENST00000623023 402 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXA4Q00056 AC244205.2-202ENST00000635781 342 ntBASIC2.98□□□□□ -1.93
HOXA4Q00056 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXA4Q00056 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA4Q00056 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXA4Q00056 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXA4Q00056 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXA4Q00056 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA4Q00056 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXA4Q00056 AP000560.1-201ENST00000624150 1937 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 CEP170P1-201ENST00000502249 4587 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXA4Q00056 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 AL133383.2-201ENST00000622958 2336 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 RNU6-858P-201ENST00000362436 107 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 Y_RNA.26-201ENST00000362539 101 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 RNA5SP197-201ENST00000363357 119 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 Y_RNA.152-201ENST00000363578 100 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 Y_RNA.358-201ENST00000365491 99 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 Y_RNA.551-201ENST00000384661 102 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 SNORA1.3-201ENST00000384676 136 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 RPS29P4-201ENST00000414733 161 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA4Q00056 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXA4Q00056 ELOCP20-201ENST00000422460 345 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 AC005300.1-201ENST00000428401 373 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA4Q00056 AC124916.1-201ENST00000444020 547 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXA4Q00056 RNU7-175P-201ENST00000515915 61 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 AC009812.2-201ENST00000517657 457 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 AP006245.1-201ENST00000522549 120 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 NACAP3-201ENST00000552100 481 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 AC104581.2-201ENST00000572227 430 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 HMGN2P15-201ENST00000585707 270 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 RAC1P9-201ENST00000604990 392 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 AC073308.1-201ENST00000623696 305 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
HOXA4Q00056 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 MTND5P7-201ENST00000413558 1798 ntBASIC2.97□□□□□ -1.93
HOXA4Q00056 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.97□□□□□ -1.93
HOXA4Q00056 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA4Q00056 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
HOXA4Q00056 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 RNU4-35P-201ENST00000362588 141 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 RNU6-806P-201ENST00000365147 105 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 RNU6-1222P-201ENST00000384615 107 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA4Q00056 AL138878.1-201ENST00000405131 347 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.96□□□□□ -1.94
HOXA4Q00056 AC007969.2-201ENST00000441891 191 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
HOXA4Q00056 AC073910.1-201ENST00000445047 438 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA4Q00056 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA4Q00056 AL513124.1-201ENST00000450410 614 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 PCNPP5-201ENST00000452246 481 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 U3.44-201ENST00000458938 192 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 RNU7-87P-201ENST00000459343 62 ntBASIC2.96□□□□□ -1.94
HOXA4Q00056 RPL30P1-201ENST00000488676 339 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms