Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC2.56□□□□□ -2
HOXA1P49639 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.56□□□□□ -2
HOXA1P49639 uc_338.25-201ENST00000613756 156 ntBASIC2.56□□□□□ -2
HOXA1P49639 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.56□□□□□ -2
HOXA1P49639 AL669831.3-213ENST00000636676 183 ntBASIC2.56□□□□□ -2
HOXA1P49639 AC138915.1-201ENST00000565427 1685 ntBASIC2.56□□□□□ -2
HOXA1P49639 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
HOXA1P49639 RNA5SP124-201ENST00000362739 110 ntBASIC2.55□□□□□ -2
HOXA1P49639 Y_RNA.132-201ENST00000363421 102 ntBASIC2.55□□□□□ -2
HOXA1P49639 Y_RNA.138-201ENST00000363462 102 ntBASIC2.55□□□□□ -2
HOXA1P49639 RNU6-1188P-201ENST00000363795 107 ntBASIC2.55□□□□□ -2
HOXA1P49639 RNU6-1280P-201ENST00000365211 107 ntBASIC2.55□□□□□ -2
HOXA1P49639 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
HOXA1P49639 RNU6-790P-201ENST00000384479 105 ntBASIC2.55□□□□□ -2
HOXA1P49639 MIR449B-201ENST00000384995 97 ntBASIC2.55□□□□□ -2
HOXA1P49639 RNY4P36-201ENST00000391116 96 ntBASIC2.55□□□□□ -2
HOXA1P49639 MTCYBP4-201ENST00000401524 249 ntBASIC2.55□□□□□ -2
HOXA1P49639 Y_RNA.594-201ENST00000410373 140 ntBASIC2.55□□□□□ -2
HOXA1P49639 Y_RNA.646-201ENST00000410980 101 ntBASIC2.55□□□□□ -2
HOXA1P49639 RPS29P4-201ENST00000414733 161 ntBASIC2.55□□□□□ -2
HOXA1P49639 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.55□□□□□ -2
HOXA1P49639 AF228730.4-201ENST00000421457 183 ntBASIC2.55□□□□□ -2
HOXA1P49639 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 SUMO1P4-201ENST00000429430 302 ntBASIC2.55□□□□□ -2
HOXA1P49639 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.55□□□□□ -2
HOXA1P49639 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.55□□□□□ -2
HOXA1P49639 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.55□□□□□ -2
HOXA1P49639 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.55□□□□□ -2
HOXA1P49639 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.55□□□□□ -2
HOXA1P49639 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 KPNA2P1-201ENST00000458289 1591 ntBASIC2.55□□□□□ -2
HOXA1P49639 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.55□□□□□ -2
HOXA1P49639 AC073901.1-201ENST00000462471 408 ntBASIC2.55□□□□□ -2
HOXA1P49639 RN7SL601P-201ENST00000471221 293 ntBASIC2.55□□□□□ -2
HOXA1P49639 AC128713.1-201ENST00000471495 306 ntBASIC2.55□□□□□ -2
HOXA1P49639 MRPL42P6-201ENST00000486397 371 ntBASIC2.55□□□□□ -2
HOXA1P49639 AC116337.1-201ENST00000509680 687 ntBASIC2.55□□□□□ -2
HOXA1P49639 PTP4A1P4-201ENST00000512479 322 ntBASIC2.55□□□□□ -2
HOXA1P49639 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.55□□□□□ -2
HOXA1P49639 RNU1-54P-201ENST00000517181 120 ntBASIC2.55□□□□□ -2
HOXA1P49639 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.55□□□□□ -2
HOXA1P49639 DNAJC8P1-201ENST00000554535 372 ntBASIC2.55□□□□□ -2
HOXA1P49639 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.55□□□□□ -2
HOXA1P49639 MIR4446-201ENST00000578505 67 ntBASIC2.55□□□□□ -2
HOXA1P49639 AC124303.1-201ENST00000605703 360 ntBASIC2.55□□□□□ -2
HOXA1P49639 AC019193.3-201ENST00000609144 554 ntBASIC2.55□□□□□ -2
HOXA1P49639 AC126177.8-201ENST00000618339 1015 ntBASIC2.55□□□□□ -2
HOXA1P49639 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HOXA1P49639 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 AL049781.1-201ENST00000623195 3585 ntBASIC2.55□□□□□ -2
HOXA1P49639 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HOXA1P49639 CDC27P3-201ENST00000635418 1910 ntBASIC2.54□□□□□ -2
HOXA1P49639 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.54□□□□□ -2
HOXA1P49639 MTND4P23-201ENST00000447723 1363 ntBASIC2.54□□□□□ -2
HOXA1P49639 RPL9P7-201ENST00000330965 580 ntBASIC2.54□□□□□ -2
HOXA1P49639 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.54□□□□□ -2
HOXA1P49639 Y_RNA.48-201ENST00000362710 103 ntBASIC2.54□□□□□ -2
HOXA1P49639 Y_RNA.126-201ENST00000363382 111 ntBASIC2.54□□□□□ -2
HOXA1P49639 RNA5SP50-201ENST00000363731 107 ntBASIC2.54□□□□□ -2
HOXA1P49639 RNU6-842P-201ENST00000384269 107 ntBASIC2.54□□□□□ -2
HOXA1P49639 Y_RNA.482-201ENST00000384377 111 ntBASIC2.54□□□□□ -2
HOXA1P49639 SNORD116-20-201ENST00000384529 92 ntBASIC2.54□□□□□ -2
HOXA1P49639 RNU6-310P-201ENST00000384655 107 ntBASIC2.54□□□□□ -2
HOXA1P49639 RNU6-331P-201ENST00000384724 107 ntBASIC2.54□□□□□ -2
HOXA1P49639 SNORA75.4-201ENST00000391278 119 ntBASIC2.54□□□□□ -2
HOXA1P49639 AL133475.1-201ENST00000404414 305 ntBASIC2.54□□□□□ -2
HOXA1P49639 RNU6-1050P-201ENST00000410388 107 ntBASIC2.54□□□□□ -2
HOXA1P49639 SYF2P2-201ENST00000417620 583 ntBASIC2.54□□□□□ -2
HOXA1P49639 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.54□□□□□ -2
HOXA1P49639 MTND3P9-201ENST00000429526 346 ntBASIC2.54□□□□□ -2
HOXA1P49639 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.54□□□□□ -2
HOXA1P49639 AC236972.1-201ENST00000433225 199 ntBASIC2.54□□□□□ -2
HOXA1P49639 AL513043.1-201ENST00000439124 535 ntBASIC2.54□□□□□ -2
HOXA1P49639 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.54□□□□□ -2
HOXA1P49639 RPL9P9-202ENST00000466501 579 ntBASIC2.54□□□□□ -2
HOXA1P49639 RN7SL297P-201ENST00000483161 293 ntBASIC2.54□□□□□ -2
HOXA1P49639 AC079140.5-201ENST00000507882 310 ntBASIC2.54□□□□□ -2
HOXA1P49639 AC005741.1-201ENST00000511094 432 ntBASIC2.54□□□□□ -2
HOXA1P49639 RNU6-377P-201ENST00000515965 102 ntBASIC2.54□□□□□ -2
HOXA1P49639 RNA5SP384-201ENST00000516615 116 ntBASIC2.54□□□□□ -2
HOXA1P49639 Y_RNA.701-201ENST00000516812 110 ntBASIC2.54□□□□□ -2
HOXA1P49639 AC023632.4-201ENST00000517783 191 ntBASIC2.54□□□□□ -2
HOXA1P49639 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.54□□□□□ -2
HOXA1P49639 AP004607.1-201ENST00000524456 203 ntBASIC2.54□□□□□ -2
HOXA1P49639 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.54□□□□□ -2
HOXA1P49639 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC2.54□□□□□ -2
HOXA1P49639 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.54□□□□□ -2
HOXA1P49639 AC044792.1-201ENST00000593294 196 ntBASIC2.54□□□□□ -2
HOXA1P49639 AP000654.2-201ENST00000605633 586 ntBASIC2.54□□□□□ -2
HOXA1P49639 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.54□□□□□ -2
HOXA1P49639 AL138880.2-201ENST00000616214 239 ntBASIC2.54□□□□□ -2
HOXA1P49639 AL160413.1-201ENST00000622780 310 ntBASIC2.54□□□□□ -2
HOXA1P49639 SCARNA4-202ENST00000625402 129 ntBASIC2.54□□□□□ -2
HOXA1P49639 MIR3199-2-201ENST00000636243 86 ntBASIC2.54□□□□□ -2
HOXA1P49639 U4.7-201ENST00000638126 106 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms