Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ZNF519P1-201ENST00000449011 1626 ntBASIC2.93□□□□□ -1.94
PTPN9P43378 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.93□□□□□ -1.94
PTPN9P43378 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
PTPN9P43378 AC099654.7-201ENST00000635788 2127 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
PTPN9P43378 AC138393.1-203ENST00000327086 343 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNU6-562P-201ENST00000362731 107 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNU6-78P-201ENST00000362897 107 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNU6-1252P-201ENST00000363054 104 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNU6-1280P-201ENST00000365211 107 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 MIR128-1-201ENST00000384921 82 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 MT-TD-201ENST00000387419 68 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNU6-1106P-201ENST00000390845 107 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNA5SP354-201ENST00000391247 136 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 AL117339.3-201ENST00000418733 162 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 AL139396.1-201ENST00000421137 167 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 HMGB1P18-201ENST00000438801 619 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 AL161651.1-201ENST00000440882 223 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 MTND1P17-201ENST00000448961 204 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 MTCYBP40-201ENST00000509390 1135 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNU6-507P-201ENST00000516045 100 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 SNORA9.3-201ENST00000516383 129 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 SNORA43.2-201ENST00000516652 128 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNU6-1332P-201ENST00000516666 104 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNU6-1088P-201ENST00000516850 104 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 RNA5SP454-201ENST00000517231 127 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 AC026371.1-201ENST00000551867 419 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 AC007151.1-201ENST00000572774 483 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 MIR6733-201ENST00000635723 61 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 TPTEP1-208ENST00000636884 213 ntBASIC2.92□□□□□ -1.94
PTPN9P43378 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
PTPN9P43378 AC004944.1-201ENST00000517807 3059 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AC010889.1-201ENST00000566193 2666 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.91□□□□□ -1.94
PTPN9P43378 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 Y_RNA.70-201ENST00000362886 110 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
PTPN9P43378 RNU6-748P-201ENST00000384648 107 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 MIR767-201ENST00000390228 109 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AC096664.2-201ENST00000411843 406 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.91□□□□□ -1.94
PTPN9P43378 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.91□□□□□ -1.94
PTPN9P43378 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.91□□□□□ -1.94
PTPN9P43378 AC093019.1-201ENST00000443135 252 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AL135938.1-201ENST00000443141 297 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 RPL39P40-201ENST00000445481 146 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 MRPL50P4-201ENST00000446432 475 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AC092001.1-201ENST00000453012 261 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 snoU109.2-201ENST00000459316 135 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.91□□□□□ -1.94
PTPN9P43378 AC103851.1-201ENST00000506833 274 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AC096745.1-201ENST00000509945 370 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.91□□□□□ -1.94
PTPN9P43378 AC091826.1-201ENST00000514065 313 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.91□□□□□ -1.94
PTPN9P43378 FGF7P1-201ENST00000582820 288 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 ZNF861P-201ENST00000588126 639 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AL391813.1-201ENST00000603098 260 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AC091152.3-201ENST00000604227 325 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AL359198.2-201ENST00000611836 194 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 AC135507.2-201ENST00000612443 309 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 uc_338.15-201ENST00000615470 191 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.91□□□□□ -1.94
PTPN9P43378 AC005858.4-201ENST00000623191 700 ntBASIC2.91□□□□□ -1.94
PTPN9P43378 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
PTPN9P43378 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
PTPN9P43378 RNU6-487P-201ENST00000365430 104 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 SNORA18.3-201ENST00000384122 132 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 RPS29P13-201ENST00000402041 169 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 AL590004.2-201ENST00000404787 371 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 MIR548K-201ENST00000408406 116 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 Z92545.1-201ENST00000411782 234 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.9□□□□□ -1.95
PTPN9P43378 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.9□□□□□ -1.95
PTPN9P43378 RPL7P37-201ENST00000425095 738 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 PTGES3P4-201ENST00000426243 356 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 RPS15AP10-201ENST00000432472 382 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.9□□□□□ -1.95
PTPN9P43378 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.9□□□□□ -1.95
PTPN9P43378 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.9□□□□□ -1.95
PTPN9P43378 RNU6-1037P-201ENST00000459571 107 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 MRPL42P6-201ENST00000486397 371 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.9□□□□□ -1.95
PTPN9P43378 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.9□□□□□ -1.95
PTPN9P43378 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.9□□□□□ -1.95
PTPN9P43378 AC092436.3-201ENST00000511788 257 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 ACA59.2-201ENST00000517061 156 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 AC138761.3-201ENST00000579993 334 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.9□□□□□ -1.95
PTPN9P43378 AL160281.1-201ENST00000605307 311 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 AC104237.2-201ENST00000612456 443 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 AC009233.1-201ENST00000616477 371 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 AL133216.2-202ENST00000634512 349 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 AC110079.1-202ENST00000635213 138 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 AC108206.1-201ENST00000570186 4159 ntBASIC2.9□□□□□ -1.95
PTPN9P43378 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
PTPN9P43378 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms