Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 FTH1P15-201ENST00000406984 280 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 RNU6-1156P-201ENST00000410365 100 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 Y_RNA.605-201ENST00000410577 105 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXD3P31249 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXD3P31249 AC006989.1-201ENST00000427212 131 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AC005300.1-201ENST00000428401 373 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXD3P31249 AL590664.1-201ENST00000448065 339 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 RPL37P4-201ENST00000448908 268 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 RPL26P9-201ENST00000457466 433 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 U8.21-201ENST00000459536 136 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXD3P31249 AC010265.1-201ENST00000513509 211 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 RNU6-579P-201ENST00000516879 102 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AC011602.1-201ENST00000546484 331 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 SUB1P3-201ENST00000564581 315 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AC024153.1-201ENST00000603103 365 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AC104695.3-201ENST00000604052 296 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXD3P31249 MIR8076-201ENST00000611401 83 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 MIR6134-201ENST00000617606 109 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 U4.6-201ENST00000621618 127 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 AC073308.1-201ENST00000623696 305 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
HOXD3P31249 MAPK10-362ENST00000641864 4484 ntBASIC2.73□□□□□ -1.97
HOXD3P31249 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
HOXD3P31249 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXD3P31249 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXD3P31249 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
HOXD3P31249 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD3P31249 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD3P31249 RNU4-35P-201ENST00000362588 141 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 RNU1-18P-201ENST00000363062 164 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 SNORA38.1-201ENST00000364172 131 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 Y_RNA.314-201ENST00000365114 102 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 RNU1-100P-201ENST00000365255 165 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 CRP-203ENST00000368111 512 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXD3P31249 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD3P31249 SAR1AP2-201ENST00000392696 594 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD3P31249 RNA5SP38-201ENST00000410750 119 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 RNA5SP120-201ENST00000410900 112 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXD3P31249 BPY2DP-201ENST00000422208 265 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 AC125238.1-201ENST00000448842 249 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 AL353752.1-201ENST00000454946 260 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 SNORA59A-201ENST00000459326 152 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 RN7SL93P-201ENST00000463035 293 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 MTATP8P1-201ENST00000467115 207 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 RPS29P2-201ENST00000479278 136 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 AC026784.1-201ENST00000507986 352 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 RNU4-77P-201ENST00000516692 156 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 RNU6-307P-201ENST00000516743 106 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 SNORA31.18-201ENST00000517043 134 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 Y_RNA.720-201ENST00000517166 92 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 AC021739.1-201ENST00000559631 174 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXD3P31249 SNORD58B-201ENST00000607313 66 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXD3P31249 AL162373.1-201ENST00000620433 407 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 SCARNA4-202ENST00000625402 129 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD3P31249 AC241585.2-209ENST00000638217 143 ntBASIC2.72□□□□□ -1.97
HOXD3P31249 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD3P31249 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXD3P31249 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD3P31249 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXD3P31249 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
HOXD3P31249 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
HOXD3P31249 AC103988.1-201ENST00000566382 2177 ntBASIC2.71□□□□□ -1.97
HOXD3P31249 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD3P31249 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD3P31249 TNPO1P3-201ENST00000436471 2662 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD3P31249 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
HOXD3P31249 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXD3P31249 Y_RNA.123-201ENST00000363338 102 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 RNU1-33P-201ENST00000364249 162 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 SNORA14A-201ENST00000364773 135 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 SNORD116-20-201ENST00000384529 92 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
HOXD3P31249 AL591034.2-201ENST00000402839 359 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 U3.39-201ENST00000408569 239 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 RNU6-985P-201ENST00000410182 104 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 AC023141.4-201ENST00000412031 328 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 NDUFS5P4-201ENST00000412983 318 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 TRIAP1P1-201ENST00000427062 225 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 AC243964.1-201ENST00000441814 261 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 AC115115.1-201ENST00000449927 248 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 AC010099.1-201ENST00000455434 375 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 RNU7-169P-201ENST00000459456 61 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 RN7SL594P-201ENST00000470590 287 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 RPL30P14-201ENST00000482744 348 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 RPL23AP49-201ENST00000492925 468 ntBASIC2.71□□□□□ -1.98
HOXD3P31249 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXD3P31249 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXD3P31249 RNU2-27P-201ENST00000516185 142 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms