Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.64□□□□□ -1.99
MSH3P20585 AC005858.4-201ENST00000623191 700 ntBASIC2.64□□□□□ -1.99
MSH3P20585 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.64□□□□□ -1.99
MSH3P20585 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
MSH3P20585 SNORD81.2-201ENST00000365153 76 ntBASIC2.63□□□□□ -1.99
MSH3P20585 RNU6-1009P-201ENST00000390996 107 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.63□□□□□ -1.99
MSH3P20585 MIR450B-201ENST00000401182 78 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.63□□□□□ -1.99
MSH3P20585 PGBD4P6-201ENST00000421501 610 ntBASIC2.63□□□□□ -1.99
MSH3P20585 BPY2DP-201ENST00000422208 265 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AC009414.1-201ENST00000427200 443 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.63□□□□□ -1.99
MSH3P20585 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.63□□□□□ -1.99
MSH3P20585 RPL7P43-201ENST00000478876 753 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AL049873.1-201ENST00000480540 376 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.63□□□□□ -1.99
MSH3P20585 AC114781.4-201ENST00000513707 639 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AC096725.1-201ENST00000514266 313 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AC004486.1-201ENST00000546846 233 ntBASIC2.63□□□□□ -1.99
MSH3P20585 NACAP3-201ENST00000552100 481 ntBASIC2.63□□□□□ -1.99
MSH3P20585 LINC00933-203ENST00000559812 219 ntBASIC2.63□□□□□ -1.99
MSH3P20585 MIR4319-201ENST00000577285 85 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.63□□□□□ -1.99
MSH3P20585 MIR3672-201ENST00000584290 82 ntBASIC2.63□□□□□ -1.99
MSH3P20585 HMGN2P15-201ENST00000585707 270 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AC091135.1-201ENST00000585943 307 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AC005261.5-201ENST00000596280 355 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AL357078.3-201ENST00000607528 618 ntBASIC2.63□□□□□ -1.99
MSH3P20585 AC025253.1-201ENST00000613623 543 ntBASIC2.63□□□□□ -1.99
MSH3P20585 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
MSH3P20585 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.63□□□□□ -1.99
MSH3P20585 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.63□□□□□ -1.99
MSH3P20585 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.62□□□□□ -1.99
MSH3P20585 MAPK10-266ENST00000641066 6555 ntBASIC2.62□□□□□ -1.99
MSH3P20585 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.62□□□□□ -1.99
MSH3P20585 RNU6-1252P-201ENST00000363054 104 ntBASIC2.62□□□□□ -1.99
MSH3P20585 Y_RNA.142-201ENST00000363491 102 ntBASIC2.62□□□□□ -1.99
MSH3P20585 RNU1-100P-201ENST00000365255 165 ntBASIC2.62□□□□□ -1.99
MSH3P20585 MIR518D-201ENST00000385014 87 ntBASIC2.62□□□□□ -1.99
MSH3P20585 MIR34A-201ENST00000385130 110 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AL139095.1-201ENST00000404326 391 ntBASIC2.62□□□□□ -1.99
MSH3P20585 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.62□□□□□ -1.99
MSH3P20585 VN1R36P-201ENST00000414936 291 ntBASIC2.62□□□□□ -1.99
MSH3P20585 RPL7P37-201ENST00000425095 738 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AC063976.3-201ENST00000426849 329 ntBASIC2.62□□□□□ -1.99
MSH3P20585 ARL5AP4-201ENST00000430731 512 ntBASIC2.62□□□□□ -1.99
MSH3P20585 SNRPEP8-201ENST00000442866 260 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.62□□□□□ -1.99
MSH3P20585 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.62□□□□□ -1.99
MSH3P20585 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH3P20585 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.62□□□□□ -1.99
MSH3P20585 RNU6-256P-201ENST00000516747 97 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AC069113.1-201ENST00000517763 267 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AC087854.1-201ENST00000519706 414 ntBASIC2.62□□□□□ -1.99
MSH3P20585 RNU6-323P-201ENST00000521915 107 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AP000889.2-201ENST00000532684 490 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.62□□□□□ -1.99
MSH3P20585 AC026464.5-201ENST00000562497 722 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AC087045.1-201ENST00000605856 382 ntBASIC2.62□□□□□ -1.99
MSH3P20585 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.62□□□□□ -1.99
MSH3P20585 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.62□□□□□ -1.99
MSH3P20585 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
MSH3P20585 AC138393.1-203ENST00000327086 343 ntBASIC2.61□□□□□ -1.99
MSH3P20585 RNU1-105P-201ENST00000363470 161 ntBASIC2.61□□□□□ -1.99
MSH3P20585 Y_RNA.212-201ENST00000364177 102 ntBASIC2.61□□□□□ -1.99
MSH3P20585 RNU6-1013P-201ENST00000384180 107 ntBASIC2.61□□□□□ -1.99
MSH3P20585 MIR196B-201ENST00000384852 84 ntBASIC2.61□□□□□ -1.99
MSH3P20585 RNA5SP354-201ENST00000391247 136 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AL356057.3-201ENST00000402607 340 ntBASIC2.61□□□□□ -1.99
MSH3P20585 RNU2-52P-201ENST00000410680 190 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.61□□□□□ -1.99
MSH3P20585 AC016831.2-201ENST00000417179 352 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.61□□□□□ -1.99
MSH3P20585 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.61□□□□□ -1.99
MSH3P20585 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.61□□□□□ -1.99
MSH3P20585 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.61□□□□□ -1.99
MSH3P20585 MTND4LP16-201ENST00000440828 295 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.61□□□□□ -1.99
MSH3P20585 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.61□□□□□ -1.99
MSH3P20585 HMGN2P10-201ENST00000448085 265 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AP000705.1-201ENST00000454567 350 ntBASIC2.61□□□□□ -1.99
MSH3P20585 RNU7-138P-201ENST00000459479 64 ntBASIC2.61□□□□□ -1.99
MSH3P20585 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.61□□□□□ -1.99
MSH3P20585 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.61□□□□□ -1.99
MSH3P20585 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.61□□□□□ -1.99
MSH3P20585 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.61□□□□□ -1.99
MSH3P20585 MIR3670-2-201ENST00000582974 65 ntBASIC2.61□□□□□ -1.99
MSH3P20585 MIR3670-1-201ENST00000584160 65 ntBASIC2.61□□□□□ -1.99
MSH3P20585 MIR3670-3-201ENST00000584855 65 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AC005498.1-201ENST00000592125 465 ntBASIC2.61□□□□□ -1.99
MSH3P20585 RNU6-85P-201ENST00000605989 107 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AL022345.1-201ENST00000607292 135 ntBASIC2.61□□□□□ -1.99
MSH3P20585 MIR3670-4-201ENST00000612260 65 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AL138726.1-201ENST00000614873 333 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AC063943.3-201ENST00000615562 356 ntBASIC2.61□□□□□ -1.99
MSH3P20585 MIR6134-201ENST00000617606 109 ntBASIC2.61□□□□□ -1.99
MSH3P20585 Z69720.2-201ENST00000624755 279 ntBASIC2.61□□□□□ -1.99
MSH3P20585 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
MSH3P20585 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms