Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC092685.1-201ENST00000447960 1243 ntBASIC-0.56□□□□□ -2.5
VCANP13611 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.56□□□□□ -2.5
VCANP13611 AC087879.1-201ENST00000474343 374 ntBASIC-0.56□□□□□ -2.5
VCANP13611 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC-0.56□□□□□ -2.5
VCANP13611 AC112187.2-201ENST00000604345 283 ntBASIC-0.56□□□□□ -2.5
VCANP13611 AL662814.1-201ENST00000617364 121 ntBASIC-0.56□□□□□ -2.5
VCANP13611 Y_RNA.533-201ENST00000384596 114 ntBASIC-0.56□□□□□ -2.5
VCANP13611 UBE2D3P2-201ENST00000424409 445 ntBASIC-0.56□□□□□ -2.5
VCANP13611 TRAPPC2P7-201ENST00000509650 231 ntBASIC-0.56□□□□□ -2.5
VCANP13611 PTK2-220ENST00000520151 573 ntTSL 4 BASIC-0.56□□□□□ -2.5
VCANP13611 AP003392.2-201ENST00000527269 208 ntBASIC-0.56□□□□□ -2.5
VCANP13611 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC-0.56□□□□□ -2.5
VCANP13611 OR5T3-201ENST00000303059 1023 ntBASIC-0.57□□□□□ -2.5
VCANP13611 ENSAP3-201ENST00000312710 333 ntBASIC-0.57□□□□□ -2.5
VCANP13611 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC-0.57□□□□□ -2.5
VCANP13611 NDUFA5P10-201ENST00000432147 357 ntBASIC-0.57□□□□□ -2.5
VCANP13611 ZNF736P11Y-201ENST00000442535 1213 ntBASIC-0.57□□□□□ -2.5
VCANP13611 USP9YP17-201ENST00000444617 696 ntBASIC-0.57□□□□□ -2.5
VCANP13611 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.57□□□□□ -2.5
VCANP13611 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC-0.57□□□□□ -2.5
VCANP13611 AC084024.2-201ENST00000503480 791 ntBASIC-0.57□□□□□ -2.5
VCANP13611 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.57□□□□□ -2.5
VCANP13611 AC022432.1-201ENST00000595739 310 ntBASIC-0.57□□□□□ -2.5
VCANP13611 AL138880.1-201ENST00000405824 642 ntBASIC-0.57□□□□□ -2.5
VCANP13611 CASP3P1-201ENST00000446037 609 ntBASIC-0.57□□□□□ -2.5
VCANP13611 RAD1P2-201ENST00000446414 663 ntBASIC-0.57□□□□□ -2.5
VCANP13611 MTND1P9-201ENST00000453775 944 ntBASIC-0.57□□□□□ -2.5
VCANP13611 AP003400.5-201ENST00000624827 617 ntBASIC-0.57□□□□□ -2.5
VCANP13611 SNORD54-201ENST00000459159 67 ntBASIC-0.57□□□□□ -2.5
VCANP13611 AC107297.1-201ENST00000459991 176 ntBASIC-0.57□□□□□ -2.5
VCANP13611 HMGB1P30-201ENST00000492455 606 ntBASIC-0.57□□□□□ -2.5
VCANP13611 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.57□□□□□ -2.5
VCANP13611 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC-0.57□□□□□ -2.5
VCANP13611 MIR4436A-201ENST00000585278 85 ntBASIC-0.57□□□□□ -2.5
VCANP13611 SNORD114-24-201ENST00000365029 72 ntBASIC-0.58□□□□□ -2.5
VCANP13611 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC-0.58□□□□□ -2.5
VCANP13611 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC-0.58□□□□□ -2.5
VCANP13611 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC-0.58□□□□□ -2.5
VCANP13611 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC-0.58□□□□□ -2.5
VCANP13611 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.58□□□□□ -2.5
VCANP13611 RNU6-1155P-201ENST00000363554 107 ntBASIC-0.58□□□□□ -2.5
VCANP13611 RNU6-339P-201ENST00000384310 107 ntBASIC-0.58□□□□□ -2.5
VCANP13611 BRK1P2-201ENST00000442875 223 ntBASIC-0.58□□□□□ -2.5
VCANP13611 AC004923.2-201ENST00000529649 369 ntBASIC-0.58□□□□□ -2.5
VCANP13611 CASP1-212ENST00000531166 300 ntTSL 5 BASIC-0.58□□□□□ -2.5
VCANP13611 AC091885.1-201ENST00000506658 268 ntBASIC-0.59□□□□□ -2.5
VCANP13611 AC104057.1-201ENST00000515547 497 ntBASIC-0.59□□□□□ -2.5
VCANP13611 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC-0.59□□□□□ -2.5
VCANP13611 AC007435.1-201ENST00000421086 415 ntBASIC-0.59□□□□□ -2.5
VCANP13611 RPS27P16-201ENST00000425758 201 ntBASIC-0.59□□□□□ -2.5
VCANP13611 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC-0.59□□□□□ -2.5
VCANP13611 RAB11AP1-201ENST00000442978 646 ntBASIC-0.59□□□□□ -2.5
VCANP13611 BX248409.1-201ENST00000455497 255 ntBASIC-0.59□□□□□ -2.5
VCANP13611 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-0.59□□□□□ -2.5
VCANP13611 AP003716.2-201ENST00000528260 108 ntBASIC-0.59□□□□□ -2.5
VCANP13611 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC-0.59□□□□□ -2.5
VCANP13611 AL391001.1-201ENST00000602747 715 ntBASIC-0.59□□□□□ -2.5
VCANP13611 USP12-203ENST00000620323 349 ntTSL 3 BASIC-0.59□□□□□ -2.5
VCANP13611 MTND4P32-201ENST00000437189 1237 ntBASIC-0.59□□□□□ -2.5
VCANP13611 AC024257.5-201ENST00000612739 531 ntBASIC-0.59□□□□□ -2.5
VCANP13611 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC-0.59□□□□□ -2.5
VCANP13611 MIR145-201ENST00000384967 88 ntBASIC-0.6□□□□□ -2.5
VCANP13611 MIR218-1-201ENST00000384999 110 ntBASIC-0.6□□□□□ -2.5
VCANP13611 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.6□□□□□ -2.5
VCANP13611 RNU6-747P-201ENST00000390928 104 ntBASIC-0.6□□□□□ -2.5
VCANP13611 RNU6-241P-201ENST00000391148 104 ntBASIC-0.6□□□□□ -2.5
VCANP13611 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC-0.6□□□□□ -2.5
VCANP13611 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC-0.6□□□□□ -2.5
VCANP13611 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC-0.6□□□□□ -2.5
VCANP13611 COX6CP3-201ENST00000580869 223 ntBASIC-0.6□□□□□ -2.5
VCANP13611 AC084824.4-201ENST00000620106 731 ntBASIC-0.6□□□□□ -2.5
VCANP13611 AC100810.6-201ENST00000638068 285 ntBASIC-0.6□□□□□ -2.5
VCANP13611 AC105758.1-201ENST00000506038 399 ntBASIC-0.6□□□□□ -2.51
VCANP13611 SNORA27.4-201ENST00000516650 95 ntBASIC-0.6□□□□□ -2.51
VCANP13611 MTCYBP22-201ENST00000603788 447 ntBASIC-0.6□□□□□ -2.51
VCANP13611 AL391597.1-201ENST00000618707 694 ntBASIC-0.6□□□□□ -2.51
VCANP13611 AL078595.3-201ENST00000623815 1166 ntBASIC-0.6□□□□□ -2.51
VCANP13611 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.6□□□□□ -2.51
VCANP13611 MIR496-201ENST00000385226 102 ntBASIC-0.6□□□□□ -2.51
VCANP13611 MIR548L-201ENST00000408303 86 ntBASIC-0.6□□□□□ -2.51
VCANP13611 FABP5P4-201ENST00000437203 171 ntBASIC-0.6□□□□□ -2.51
VCANP13611 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC-0.6□□□□□ -2.51
VCANP13611 AC022447.1-201ENST00000515358 464 ntBASIC-0.6□□□□□ -2.51
VCANP13611 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.6□□□□□ -2.51
VCANP13611 SNORA70.22-201ENST00000517160 124 ntBASIC-0.6□□□□□ -2.51
VCANP13611 MIR7844-201ENST00000616161 122 ntBASIC-0.6□□□□□ -2.51
VCANP13611 Y_RNA.326-201ENST00000365176 113 ntBASIC-0.61□□□□□ -2.51
VCANP13611 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.61□□□□□ -2.51
VCANP13611 MIR196A1-201ENST00000388006 70 ntBASIC-0.61□□□□□ -2.51
VCANP13611 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC-0.61□□□□□ -2.51
VCANP13611 AC091860.1-201ENST00000505723 432 ntBASIC-0.61□□□□□ -2.51
VCANP13611 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC-0.61□□□□□ -2.51
VCANP13611 MIR4788-201ENST00000639104 80 ntBASIC-0.61□□□□□ -2.51
VCANP13611 AC005832.2-201ENST00000538921 1430 ntBASIC-0.61□□□□□ -2.51
VCANP13611 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC-0.61□□□□□ -2.51
VCANP13611 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC-0.61□□□□□ -2.51
VCANP13611 AC074344.1-201ENST00000512823 224 ntBASIC-0.61□□□□□ -2.51
VCANP13611 AC016065.2-201ENST00000514530 444 ntBASIC-0.61□□□□□ -2.51
VCANP13611 AC025588.2-201ENST00000604851 466 ntBASIC-0.61□□□□□ -2.51
VCANP13611 AC105129.3-201ENST00000605455 485 ntBASIC-0.61□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms