Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.91□□□□□ -1.78
COL6A1P12109 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.91□□□□□ -1.78
COL6A1P12109 RPS26P15-201ENST00000488067 348 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 TRBV12-2-201ENST00000489763 344 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.91□□□□□ -1.78
COL6A1P12109 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.91□□□□□ -1.78
COL6A1P12109 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.91□□□□□ -1.78
COL6A1P12109 RNA5SP341-201ENST00000516261 117 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 SCARNA15.2-201ENST00000516409 127 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 RNU6-1256P-201ENST00000516539 103 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 Y_RNA.687-201ENST00000516558 91 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 CBX3P8-201ENST00000532412 525 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 AP000867.2-201ENST00000532468 320 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 TRAV32-201ENST00000553993 340 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.91□□□□□ -1.78
COL6A1P12109 AC006600.1-201ENST00000572529 153 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 MIR3186-201ENST00000577404 85 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 VN1R91P-201ENST00000594377 169 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 AP000787.2-201ENST00000604432 568 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 MTND4LP5-201ENST00000605152 292 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 AL162274.2-201ENST00000614406 332 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 AP003355.3-201ENST00000623465 114 ntBASIC3.91□□□□□ -1.78
COL6A1P12109 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
COL6A1P12109 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.91□□□□□ -1.78
COL6A1P12109 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL6A1P12109 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.9□□□□□ -1.78
COL6A1P12109 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL6A1P12109 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.9□□□□□ -1.79
COL6A1P12109 AL353746.1-201ENST00000566293 6881 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 Y_RNA.48-201ENST00000362710 103 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 RNU6-1167P-201ENST00000363227 94 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 RNU6-301P-201ENST00000384277 107 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 Y_RNA.551-201ENST00000384661 102 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 SNORA48.8-201ENST00000391324 134 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 RPL21P1-201ENST00000399532 476 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL6A1P12109 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 MIR1302-6-201ENST00000408466 90 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.9□□□□□ -1.79
COL6A1P12109 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A1P12109 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A1P12109 AC133134.1-201ENST00000466800 359 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A1P12109 RNU6-1143P-201ENST00000516125 104 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 RNU6-579P-201ENST00000516879 102 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.9□□□□□ -1.79
COL6A1P12109 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A1P12109 AC125232.2-201ENST00000592457 143 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 AC078899.3-201ENST00000599065 212 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 AC098826.3-201ENST00000603823 466 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 AC004805.2-201ENST00000605382 482 ntBASIC3.9□□□□□ -1.79
COL6A1P12109 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.9□□□□□ -1.79
COL6A1P12109 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A1P12109 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 RNA5SP139-201ENST00000364340 117 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 RNU4-50P-201ENST00000364361 141 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 CD24P4-201ENST00000382840 243 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 AL591034.2-201ENST00000402839 359 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 NDUFB4P7-201ENST00000423198 363 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 AC006028.1-201ENST00000438379 402 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.89□□□□□ -1.79
COL6A1P12109 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.89□□□□□ -1.79
COL6A1P12109 AC022493.1-201ENST00000492984 337 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.89□□□□□ -1.79
COL6A1P12109 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 RNU1-86P-201ENST00000516108 154 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 RNU1-107P-201ENST00000516617 154 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 RNA5SP471-201ENST00000516971 106 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.89□□□□□ -1.79
COL6A1P12109 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.89□□□□□ -1.79
COL6A1P12109 CASP1P1-201ENST00000526345 212 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A1P12109 AC011602.1-201ENST00000546484 331 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 TRAV37-201ENST00000553906 342 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 HMGB1P14-201ENST00000557424 591 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.89□□□□□ -1.79
COL6A1P12109 HSPE1P7-201ENST00000604681 321 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 AC073308.1-201ENST00000623696 305 ntBASIC3.89□□□□□ -1.79
COL6A1P12109 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.89□□□□□ -1.79
COL6A1P12109 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A1P12109 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL6A1P12109 MFSD8-233ENST00000641482 4860 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 OR56A5-201ENST00000340110 738 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 U8.8-201ENST00000365399 135 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 Y_RNA.350-201ENST00000365409 98 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 RNA5SP252-201ENST00000391131 119 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 AC017079.2-201ENST00000416102 485 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 AL096701.2-201ENST00000416920 238 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.88□□□□□ -1.79
COL6A1P12109 TOMM20P4-201ENST00000427861 435 ntBASIC3.88□□□□□ -1.79
COL6A1P12109 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.88□□□□□ -1.79
COL6A1P12109 AL512844.2-201ENST00000433990 593 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 158.1 ms