Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC107401.1-201ENST00000503426 685 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.38□□□□□ -1.87
HMGB1P09429 CYCSP27-201ENST00000527643 293 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.38□□□□□ -1.87
HMGB1P09429 AC022616.8-201ENST00000533569 253 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 VN1R80P-201ENST00000597126 338 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 AP001330.5-201ENST00000607176 411 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 AC103591.3-201ENST00000608684 209 ntBASIC3.38□□□□□ -1.87
HMGB1P09429 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
HMGB1P09429 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HMGB1P09429 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.37□□□□□ -1.87
HMGB1P09429 RPL9P7-201ENST00000330965 580 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 RNU6-1085P-201ENST00000363576 107 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 RNU6-1322P-201ENST00000364309 107 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 SNORA6-201ENST00000384033 151 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 RPLP0P7-201ENST00000416050 667 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 RPL32P28-201ENST00000443577 397 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 AC013470.1-201ENST00000453438 462 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 TPTE2P5-203ENST00000458118 728 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 AC055731.1-201ENST00000474387 401 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 HMGB1P35-201ENST00000503360 598 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 AC104383.1-201ENST00000530297 370 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 AC090115.3-201ENST00000553218 849 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HMGB1P09429 AL162274.2-201ENST00000614406 332 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 AC073534.2-201ENST00000620377 381 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 YWHAEP7-203ENST00000622054 312 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 SNORD98-201ENST00000636377 67 ntBASIC3.37□□□□□ -1.87
HMGB1P09429 MIR26A1-201ENST00000362205 77 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 RNU6-1285P-201ENST00000363480 105 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 SNORA69-201ENST00000383895 132 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 RNU6-1106P-201ENST00000390845 107 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 HMGN2P39-201ENST00000398005 273 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 AL355497.1-201ENST00000406262 551 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.36□□□□□ -1.87
HMGB1P09429 MORF4L1P6-201ENST00000418771 268 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 RPL35AP12-201ENST00000425362 338 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.36□□□□□ -1.87
HMGB1P09429 RNU4-29P-201ENST00000515943 174 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 SNORA9.3-201ENST00000516383 129 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 RNA5SP82-201ENST00000516707 92 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 RNU2-19P-201ENST00000517288 84 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 COPS8P3-201ENST00000526024 482 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.36□□□□□ -1.87
HMGB1P09429 HSPE1P4-201ENST00000550617 308 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.36□□□□□ -1.87
HMGB1P09429 AL034555.1-201ENST00000604816 211 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 AC068792.1-201ENST00000621354 417 ntBASIC3.36□□□□□ -1.87
HMGB1P09429 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
HMGB1P09429 AC069528.2-201ENST00000624849 1991 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 RNU6-1141P-201ENST00000364520 107 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 Y_RNA.481-201ENST00000384373 102 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 MTCO3P40-201ENST00000392516 676 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 BTF3L4P2-201ENST00000392798 346 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AL590135.1-201ENST00000422215 156 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AC019205.3-201ENST00000424573 156 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AC244670.1-201ENST00000436879 112 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.35□□□□□ -1.87
HMGB1P09429 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.35□□□□□ -1.87
HMGB1P09429 AC016700.2-201ENST00000446011 156 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 PSPHP1-201ENST00000450062 261 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.35□□□□□ -1.87
HMGB1P09429 RNU6-261P-201ENST00000459506 102 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 S100A11P2-201ENST00000467589 312 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AC083798.1-201ENST00000472671 131 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 RPS27AP9-201ENST00000477681 438 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.35□□□□□ -1.87
HMGB1P09429 AC015911.1-201ENST00000495111 156 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 HIGD1AP13-201ENST00000509878 289 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 RNU6-189P-201ENST00000516120 101 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.35□□□□□ -1.87
HMGB1P09429 MIR4424-201ENST00000585257 86 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AC092747.3-201ENST00000603769 301 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.35□□□□□ -1.87
HMGB1P09429 AC007621.1-201ENST00000604544 437 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.35□□□□□ -1.87
HMGB1P09429 AC009090.3-201ENST00000616553 565 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AC124864.2-201ENST00000624736 186 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HMGB1P09429 AC092593.1-201ENST00000515413 1815 ntBASIC3.35□□□□□ -1.87
HMGB1P09429 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HMGB1P09429 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.34□□□□□ -1.87
HMGB1P09429 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HMGB1P09429 AL596028.1-201ENST00000326971 197 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 MIR208A-201ENST00000362287 71 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 MIR181A2-201ENST00000384863 110 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 SNORD73A-201ENST00000386062 65 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 RNA5SP210-201ENST00000391034 120 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 RPS29P13-201ENST00000402041 169 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 SNORD88.1-201ENST00000408684 91 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 RNU2-16P-201ENST00000410712 136 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.34□□□□□ -1.87
HMGB1P09429 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.34□□□□□ -1.87
HMGB1P09429 RPL9P6-201ENST00000492764 598 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.34□□□□□ -1.87
HMGB1P09429 AC009646.1-201ENST00000510455 318 ntBASIC3.34□□□□□ -1.87
HMGB1P09429 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.34□□□□□ -1.87
HMGB1P09429 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.34□□□□□ -1.87
HMGB1P09429 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.34□□□□□ -1.87
HMGB1P09429 AC024909.2-201ENST00000553035 286 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms