Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.32□□□□□ -2.2
CPSF4O95639 AC109446.2-201ENST00000567872 497 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.32□□□□□ -2.2
CPSF4O95639 BNIP3P8-201ENST00000597863 560 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 BNIP3P30-201ENST00000601184 574 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 AC021646.1-201ENST00000605469 484 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.32□□□□□ -2.2
CPSF4O95639 AC012360.2-201ENST00000609349 391 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 AL133173.2-201ENST00000614270 90 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 MIR7974-201ENST00000615835 79 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 AC009159.2-201ENST00000617603 606 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 AC019226.2-201ENST00000625973 424 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 MIR3529-201ENST00000637713 78 ntBASIC1.32□□□□□ -2.2
CPSF4O95639 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CPSF4O95639 RNU6-371P-201ENST00000364283 108 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 RNU1-57P-201ENST00000384491 166 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AL591034.2-201ENST00000402839 359 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 RNA5SP111-201ENST00000411386 101 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 EEF1A1P40-201ENST00000412883 573 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 UBE2V1P10-201ENST00000414685 269 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 EDDM3CP-201ENST00000415977 425 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.31□□□□□ -2.2
CPSF4O95639 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.31□□□□□ -2.2
CPSF4O95639 SNORA4.4-201ENST00000515921 135 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 Y_RNA.687-201ENST00000516558 91 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AP004607.1-201ENST00000524456 203 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 CR383656.8-201ENST00000549046 145 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.31□□□□□ -2.2
CPSF4O95639 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.31□□□□□ -2.2
CPSF4O95639 AC027807.1-201ENST00000559921 996 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AC233702.2-202ENST00000562547 291 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 MIR3945-201ENST00000581853 98 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 RPL30P11-203ENST00000598995 310 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AC073410.2-201ENST00000603240 332 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.31□□□□□ -2.2
CPSF4O95639 AC108479.2-201ENST00000617314 601 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AL359740.1-201ENST00000624340 592 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AL603839.4-201ENST00000624658 1005 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AC007494.3-201ENST00000624660 743 ntBASIC1.31□□□□□ -2.2
CPSF4O95639 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.31□□□□□ -2.2
CPSF4O95639 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.31□□□□□ -2.2
CPSF4O95639 ZNF702P-202ENST00000434269 1966 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
CPSF4O95639 RNU6-1010P-201ENST00000362757 107 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 RNU1-23P-201ENST00000363361 144 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 RNY4P34-201ENST00000364779 95 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 SNORD116-20-201ENST00000384529 92 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 MIR186-201ENST00000384988 86 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AL512604.1-201ENST00000404812 257 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 RNU6-195P-201ENST00000411352 109 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 RPS3AP3-201ENST00000411933 242 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 RPL21P90-201ENST00000415692 466 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.3□□□□□ -2.2
CPSF4O95639 CYCSP46-201ENST00000423569 204 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.3□□□□□ -2.2
CPSF4O95639 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.3□□□□□ -2.2
CPSF4O95639 AC000111.3-201ENST00000433478 193 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.3□□□□□ -2.2
CPSF4O95639 AL133217.1-201ENST00000450980 425 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC012308.1-201ENST00000451232 178 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.3□□□□□ -2.2
CPSF4O95639 AP001025.1-201ENST00000486139 332 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC018868.1-201ENST00000491307 315 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.3□□□□□ -2.2
CPSF4O95639 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.3□□□□□ -2.2
CPSF4O95639 AC116562.3-201ENST00000506136 177 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 MRPS17P9-201ENST00000511924 393 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC091965.2-201ENST00000512324 613 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 RNU1-86P-201ENST00000516108 154 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 RNU1-107P-201ENST00000516617 154 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 SNORA48.11-201ENST00000517015 89 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 RNU6-685P-201ENST00000517088 95 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.3□□□□□ -2.2
CPSF4O95639 AC068587.5-201ENST00000528506 175 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 MIR3126-201ENST00000577443 74 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 MIR3915-201ENST00000578518 97 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.3□□□□□ -2.2
CPSF4O95639 AL158827.2-201ENST00000602494 330 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC090578.1-201ENST00000604955 591 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AL670379.4-201ENST00000605279 254 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC087683.2-201ENST00000611384 326 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC1.3□□□□□ -2.2
CPSF4O95639 AC008250.2-201ENST00000615261 205 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AC093648.1-201ENST00000623546 606 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 AL691447.3-201ENST00000635020 330 ntBASIC1.3□□□□□ -2.2
CPSF4O95639 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.29□□□□□ -2.2
CPSF4O95639 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.29□□□□□ -2.2
CPSF4O95639 RNU6-179P-201ENST00000363350 107 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 RNU6-529P-201ENST00000363383 104 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 SNORA25B-201ENST00000365507 128 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 RNU6-203P-201ENST00000384038 104 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 RNU6-622P-201ENST00000384272 103 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 Y_RNA.576-201ENST00000384781 102 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 MIR561-201ENST00000385216 97 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 AL365203.2-201ENST00000423444 196 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 MTCYBP5-201ENST00000423752 1135 ntBASIC1.29□□□□□ -2.2
CPSF4O95639 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.29□□□□□ -2.2
CPSF4O95639 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.29□□□□□ -2.2
CPSF4O95639 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.29□□□□□ -2.2
CPSF4O95639 MTCO3P5-201ENST00000433620 714 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms