Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ZNF658B-202ENST00000615961 3375 ntBASIC2.4□□□□□ -2.02
SIX3O95343 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
SIX3O95343 AC069528.2-201ENST00000624849 1991 ntBASIC2.4□□□□□ -2.02
SIX3O95343 SNORA67.1-201ENST00000364749 141 ntBASIC2.4□□□□□ -2.03
SIX3O95343 RNU6-1303P-201ENST00000364841 107 ntBASIC2.4□□□□□ -2.03
SIX3O95343 RNU1-52P-201ENST00000384190 164 ntBASIC2.4□□□□□ -2.03
SIX3O95343 MIR27B-201ENST00000385129 97 ntBASIC2.4□□□□□ -2.03
SIX3O95343 RNA5SP390-201ENST00000410191 113 ntBASIC2.4□□□□□ -2.03
SIX3O95343 RNU4-55P-201ENST00000410731 137 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AL096701.2-201ENST00000416920 238 ntBASIC2.4□□□□□ -2.03
SIX3O95343 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.4□□□□□ -2.03
SIX3O95343 AC009238.1-201ENST00000442165 424 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AC009237.6-201ENST00000446969 424 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.4□□□□□ -2.03
SIX3O95343 AL356010.1-201ENST00000456364 102 ntBASIC2.4□□□□□ -2.03
SIX3O95343 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.4□□□□□ -2.03
SIX3O95343 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.4□□□□□ -2.03
SIX3O95343 RPS29P21-201ENST00000496272 170 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.4□□□□□ -2.03
SIX3O95343 RPL37P25-201ENST00000507308 276 ntBASIC2.4□□□□□ -2.03
SIX3O95343 RN7SKP24-201ENST00000515888 284 ntBASIC2.4□□□□□ -2.03
SIX3O95343 RNU6-377P-201ENST00000515965 102 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.4□□□□□ -2.03
SIX3O95343 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.4□□□□□ -2.03
SIX3O95343 MIR3126-201ENST00000577443 74 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.4□□□□□ -2.03
SIX3O95343 SNORD53-201ENST00000579969 78 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AC008752.3-201ENST00000588113 712 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AC136475.10-201ENST00000620253 385 ntBASIC2.4□□□□□ -2.03
SIX3O95343 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SIX3O95343 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.39□□□□□ -2.03
SIX3O95343 MIR21-201ENST00000362134 72 ntBASIC2.39□□□□□ -2.03
SIX3O95343 RNU6-655P-201ENST00000362858 107 ntBASIC2.39□□□□□ -2.03
SIX3O95343 RNU6-996P-201ENST00000365438 107 ntBASIC2.39□□□□□ -2.03
SIX3O95343 RNU6-1032P-201ENST00000384100 107 ntBASIC2.39□□□□□ -2.03
SIX3O95343 Y_RNA.480-201ENST00000384364 102 ntBASIC2.39□□□□□ -2.03
SIX3O95343 Y_RNA.582-201ENST00000391023 95 ntBASIC2.39□□□□□ -2.03
SIX3O95343 DEFB108C-201ENST00000400154 252 ntBASIC2.39□□□□□ -2.03
SIX3O95343 MTCYBP8-201ENST00000422855 651 ntBASIC2.39□□□□□ -2.03
SIX3O95343 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.39□□□□□ -2.03
SIX3O95343 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
SIX3O95343 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.39□□□□□ -2.03
SIX3O95343 RPL7P43-201ENST00000478876 753 ntBASIC2.39□□□□□ -2.03
SIX3O95343 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.39□□□□□ -2.03
SIX3O95343 SNORA31.23-201ENST00000517219 133 ntBASIC2.39□□□□□ -2.03
SIX3O95343 RNU6-586P-201ENST00000517265 104 ntBASIC2.39□□□□□ -2.03
SIX3O95343 AC109329.1-201ENST00000518744 317 ntBASIC2.39□□□□□ -2.03
SIX3O95343 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.39□□□□□ -2.03
SIX3O95343 AL138976.2-201ENST00000563989 694 ntBASIC2.39□□□□□ -2.03
SIX3O95343 MTATP6P3-201ENST00000581686 676 ntBASIC2.39□□□□□ -2.03
SIX3O95343 U2.17-201ENST00000611454 95 ntBASIC2.39□□□□□ -2.03
SIX3O95343 AL137847.3-201ENST00000611521 109 ntBASIC2.39□□□□□ -2.03
SIX3O95343 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.39□□□□□ -2.03
SIX3O95343 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.39□□□□□ -2.03
SIX3O95343 U4atac.1-201ENST00000618345 95 ntBASIC2.39□□□□□ -2.03
SIX3O95343 AC097372.5-201ENST00000623665 376 ntBASIC2.39□□□□□ -2.03
SIX3O95343 AC022418.1-201ENST00000624118 445 ntBASIC2.39□□□□□ -2.03
SIX3O95343 AC092608.2-201ENST00000624427 218 ntBASIC2.39□□□□□ -2.03
SIX3O95343 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.39□□□□□ -2.03
SIX3O95343 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.38□□□□□ -2.03
SIX3O95343 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SIX3O95343 Y_RNA.51-201ENST00000362725 102 ntBASIC2.38□□□□□ -2.03
SIX3O95343 RNU6-552P-201ENST00000362869 119 ntBASIC2.38□□□□□ -2.03
SIX3O95343 U3.13-201ENST00000364804 214 ntBASIC2.38□□□□□ -2.03
SIX3O95343 RNU1-51P-201ENST00000365345 176 ntBASIC2.38□□□□□ -2.03
SIX3O95343 RNU6-1119P-201ENST00000384349 108 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AC068050.1-201ENST00000394891 380 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AL606923.1-201ENST00000406616 190 ntBASIC2.38□□□□□ -2.03
SIX3O95343 SNORA3.2-201ENST00000408221 125 ntBASIC2.38□□□□□ -2.03
SIX3O95343 MIR1289-2-201ENST00000408360 111 ntBASIC2.38□□□□□ -2.03
SIX3O95343 RNU2-3P-201ENST00000410144 191 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AL663109.1-201ENST00000411498 844 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.38□□□□□ -2.03
SIX3O95343 AL669831.1-202ENST00000428504 417 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.38□□□□□ -2.03
SIX3O95343 GTF2IP13-201ENST00000438487 386 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.38□□□□□ -2.03
SIX3O95343 SNRPGP7-201ENST00000469016 106 ntBASIC2.38□□□□□ -2.03
SIX3O95343 RPL23AP45-201ENST00000476406 468 ntBASIC2.38□□□□□ -2.03
SIX3O95343 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.38□□□□□ -2.03
SIX3O95343 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.38□□□□□ -2.03
SIX3O95343 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.38□□□□□ -2.03
SIX3O95343 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.38□□□□□ -2.03
SIX3O95343 HMGB1P29-201ENST00000505659 499 ntBASIC2.38□□□□□ -2.03
SIX3O95343 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.38□□□□□ -2.03
SIX3O95343 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.38□□□□□ -2.03
SIX3O95343 RNU4-29P-201ENST00000515943 174 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AC069113.1-201ENST00000517763 267 ntBASIC2.38□□□□□ -2.03
SIX3O95343 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.38□□□□□ -2.03
SIX3O95343 AC090897.2-201ENST00000581715 130 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AC091805.2-201ENST00000603848 235 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AC009233.1-201ENST00000616477 371 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AL353997.5-201ENST00000618886 171 ntBASIC2.38□□□□□ -2.03
SIX3O95343 AC005609.4-201ENST00000625071 447 ntBASIC2.38□□□□□ -2.03
SIX3O95343 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
SIX3O95343 AC002543.1-201ENST00000299783 1954 ntBASIC2.38□□□□□ -2.03
SIX3O95343 Y_RNA.159-201ENST00000363674 87 ntBASIC2.37□□□□□ -2.03
SIX3O95343 MIR518C-201ENST00000384822 101 ntBASIC2.37□□□□□ -2.03
SIX3O95343 MIR561-201ENST00000385216 97 ntBASIC2.37□□□□□ -2.03
SIX3O95343 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms