Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.33□□□□□ -1.88
VPS4BO75351 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS4BO75351 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS4BO75351 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4BO75351 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS4BO75351 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
VPS4BO75351 GABRG2-229ENST00000641017 3628 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS4BO75351 AC010680.1-201ENST00000590024 3590 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 Y_RNA.2-201ENST00000362330 96 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 SNORD9-201ENST00000362566 104 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 RNU6-1317P-201ENST00000364582 104 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 RNU5E-7P-201ENST00000365290 117 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 MIR606-201ENST00000384851 96 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 SNORA48.8-201ENST00000391324 134 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AL591034.2-201ENST00000402839 359 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AL513475.1-201ENST00000406602 315 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 BPY2DP-201ENST00000422208 265 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS4BO75351 MTND2P23-201ENST00000422990 651 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 HMGN2P20-201ENST00000437531 273 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AC125238.1-201ENST00000448842 249 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS4BO75351 HMGN1P10-201ENST00000474557 553 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS4BO75351 RNU6-1045P-201ENST00000516321 107 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 SNORA64.4-201ENST00000516632 81 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 SNORA43.2-201ENST00000516652 128 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AC103996.1-201ENST00000555468 102 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS4BO75351 SUB1P3-201ENST00000564581 315 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS4BO75351 AC006504.6-201ENST00000590142 199 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AC008962.1-201ENST00000605729 304 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 AC116312.1-201ENST00000606841 314 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.32□□□□□ -1.88
VPS4BO75351 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS4BO75351 AF117829.1-206ENST00000621883 3802 ntBASIC3.32□□□□□ -1.88
VPS4BO75351 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS4BO75351 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
VPS4BO75351 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
VPS4BO75351 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS4BO75351 RNU6-428P-201ENST00000362942 107 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 RN7SKP111-201ENST00000410349 271 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 RNA5SP293-201ENST00000410527 113 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS4BO75351 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS4BO75351 RPL23AP22-201ENST00000437556 453 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 AL714022.1-201ENST00000439897 151 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 U3.44-201ENST00000458938 192 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 RPS29P27-201ENST00000463711 170 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 RNU6-377P-201ENST00000515965 102 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 AC104027.1-201ENST00000521887 300 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 AP004607.1-201ENST00000524456 203 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS4BO75351 NACAP3-201ENST00000552100 481 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 AC012493.2-201ENST00000595083 291 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.31□□□□□ -1.88
VPS4BO75351 MIR8076-201ENST00000611401 83 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 AC004852.3-201ENST00000614131 326 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 AC002076.2-201ENST00000617362 122 ntBASIC3.31□□□□□ -1.88
VPS4BO75351 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS4BO75351 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS4BO75351 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS4BO75351 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS4BO75351 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS4BO75351 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS4BO75351 Y_RNA.148-201ENST00000363557 117 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 RNU6-336P-201ENST00000364891 107 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 RNU6-898P-201ENST00000365627 104 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 Y_RNA.496-201ENST00000384444 101 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 RNU6-790P-201ENST00000384479 105 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 RNU6-308P-201ENST00000390957 107 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 UBA52P6-201ENST00000399822 382 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS4BO75351 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS4BO75351 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS4BO75351 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS4BO75351 HMGN2P10-201ENST00000448085 265 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 BTF3P15-201ENST00000455606 336 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 U8.21-201ENST00000459536 136 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS4BO75351 ACA59.1-201ENST00000515966 143 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 RNU6-327P-201ENST00000516270 127 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 RN7SKP295-201ENST00000517264 153 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 RNU6-988P-201ENST00000519081 107 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.3□□□□□ -1.88
VPS4BO75351 MIR5696-201ENST00000578474 85 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS4BO75351 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS4BO75351 AL137843.1-201ENST00000605078 385 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 AC016925.2-201ENST00000605108 242 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 MIR3976-201ENST00000606807 139 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 AC040896.1-201ENST00000613819 479 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 U4.6-201ENST00000621618 127 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
VPS4BO75351 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
VPS4BO75351 MFSD8-236ENST00000641509 4050 ntBASIC3.3□□□□□ -1.88
VPS4BO75351 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms