Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.09□□□□□ -2.4
AP4S1Q9Y587 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC0.09□□□□□ -2.4
AP4S1Q9Y587 AC108740.1-201ENST00000498629 225 ntBASIC0.09□□□□□ -2.4
AP4S1Q9Y587 MTCO1P31-201ENST00000506355 492 ntBASIC0.09□□□□□ -2.4
AP4S1Q9Y587 RNU5A-4P-201ENST00000516588 111 ntBASIC0.09□□□□□ -2.4
AP4S1Q9Y587 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.09□□□□□ -2.4
AP4S1Q9Y587 MIR4711-201ENST00000578274 70 ntBASIC0.09□□□□□ -2.4
AP4S1Q9Y587 AC107304.1-201ENST00000604229 296 ntBASIC0.09□□□□□ -2.4
AP4S1Q9Y587 AC010133.1-201ENST00000615809 842 ntBASIC0.09□□□□□ -2.4
AP4S1Q9Y587 AC004009.2-201ENST00000623016 728 ntBASIC0.09□□□□□ -2.4
AP4S1Q9Y587 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.08□□□□□ -2.4
AP4S1Q9Y587 MIR520A-201ENST00000384862 85 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 MIR1295A-201ENST00000408463 79 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.08□□□□□ -2.4
AP4S1Q9Y587 VN1R42P-201ENST00000424651 344 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 AL035398.1-201ENST00000430869 322 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 MTCO3P18-201ENST00000440206 761 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 GAPDHP17-201ENST00000449858 1001 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 MTCO3P7-201ENST00000510008 774 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 SNORA68.3-201ENST00000515906 83 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.08□□□□□ -2.4
AP4S1Q9Y587 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC0.08□□□□□ -2.4
AP4S1Q9Y587 BPTFP1-201ENST00000579209 492 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 BNIP3P24-201ENST00000593398 557 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 AC073410.2-201ENST00000603240 332 ntBASIC0.08□□□□□ -2.4
AP4S1Q9Y587 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.08□□□□□ -2.4
AP4S1Q9Y587 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 RNU6-349P-201ENST00000362402 107 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 SNORD114-19-201ENST00000363072 75 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 Y_RNA.548-201ENST00000384656 105 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 RNU6-331P-201ENST00000384724 107 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 EBAG9P1-201ENST00000418955 543 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AC099677.2-201ENST00000436385 175 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AL050341.1-201ENST00000447743 313 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 RPS27AP8-201ENST00000452665 445 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 RPL30P6-201ENST00000475925 342 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 SNORA31.2-201ENST00000516019 134 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AL133445.2-201ENST00000611191 527 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 AC093648.1-201ENST00000623546 606 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 MIR1248-201ENST00000629190 106 ntBASIC0.07□□□□□ -2.4
AP4S1Q9Y587 MIR525-201ENST00000384978 85 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.06□□□□□ -2.4
AP4S1Q9Y587 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.06□□□□□ -2.4
AP4S1Q9Y587 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.06□□□□□ -2.4
AP4S1Q9Y587 SNORD79.1-201ENST00000516069 84 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 RN7SKP12-201ENST00000516275 143 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 RNU6-1183P-201ENST00000517054 60 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 AL353997.4-201ENST00000586196 166 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 AL138726.1-201ENST00000614873 333 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 Z69720.2-201ENST00000624755 279 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 AC245060.5-201ENST00000610778 3293 ntBASIC0.06□□□□□ -2.4
AP4S1Q9Y587 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
AP4S1Q9Y587 RNU1-133P-201ENST00000364867 167 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 RNU6-673P-201ENST00000365084 104 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 RNU6-969P-201ENST00000383900 105 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 MIR186-201ENST00000384988 86 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.05□□□□□ -2.4
AP4S1Q9Y587 RAB28P5-201ENST00000427490 651 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AC097473.1-201ENST00000508142 408 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AC105313.1-201ENST00000509121 353 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 SNORA31.4-201ENST00000516049 129 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 RNU6-889P-201ENST00000517189 103 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 RN7SKP256-201ENST00000517201 314 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AC093012.1-202ENST00000549403 582 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.05□□□□□ -2.4
AP4S1Q9Y587 MIR4781-201ENST00000585250 76 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 KC877982.1-201ENST00000602313 470 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AL590229.1-201ENST00000603497 542 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 Z83818.1-201ENST00000603584 150 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AC069114.2-201ENST00000604699 304 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AP000654.2-201ENST00000605633 586 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC0.05□□□□□ -2.4
AP4S1Q9Y587 AC092106.3-201ENST00000611308 722 ntBASIC0.05□□□□□ -2.4
AP4S1Q9Y587 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.05□□□□□ -2.4
AP4S1Q9Y587 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.04□□□□□ -2.4
AP4S1Q9Y587 MIRLET7D-201ENST00000362263 87 ntBASIC0.04□□□□□ -2.4
AP4S1Q9Y587 RNU6-657P-201ENST00000383904 107 ntBASIC0.04□□□□□ -2.4
AP4S1Q9Y587 SNORD116-23-201ENST00000384645 92 ntBASIC0.04□□□□□ -2.4
AP4S1Q9Y587 MIR936-201ENST00000401264 98 ntBASIC0.04□□□□□ -2.4
AP4S1Q9Y587 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.04□□□□□ -2.4
AP4S1Q9Y587 RNA5SP247-201ENST00000411181 105 ntBASIC0.04□□□□□ -2.4
AP4S1Q9Y587 ZNF965P-201ENST00000432501 817 ntBASIC0.04□□□□□ -2.4
AP4S1Q9Y587 MTCO3P17-201ENST00000443775 513 ntBASIC0.04□□□□□ -2.4
AP4S1Q9Y587 AL929288.2-201ENST00000446368 407 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms