Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 BPY2DP-201ENST00000422208 265 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 MTCYBP6-201ENST00000441810 138 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC007677.1-201ENST00000445757 515 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU7-187P-201ENST00000458985 68 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RPL30P14-201ENST00000482744 348 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC026782.1-201ENST00000512952 449 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-1016P-201ENST00000516689 94 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 MIR5004-201ENST00000579078 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC124303.1-201ENST00000605703 360 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-6P-201ENST00000606623 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AL161423.1-201ENST00000613700 262 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC126177.8-201ENST00000618339 1015 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 MTND4LP32-201ENST00000636111 270 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC008264.2-201ENST00000610193 3731 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC009487.2-201ENST00000420969 6821 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
VPS4AQ9UN37 MIR422A-201ENST00000362286 90 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 SNORD42.2-201ENST00000365570 69 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 RNU6-601P-201ENST00000384540 107 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 RNU6-658P-201ENST00000384606 106 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 RNY4P36-201ENST00000391116 96 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 U3.37-201ENST00000408528 213 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 RNA5SP38-201ENST00000410750 119 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 RNU6-370P-201ENST00000411008 104 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AL030996.1-201ENST00000411430 235 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AL354751.2-201ENST00000415471 210 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC016831.2-201ENST00000417179 352 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS4AQ9UN37 RPL37P4-201ENST00000448908 268 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC010099.1-201ENST00000455434 375 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 ELOCP24-201ENST00000456370 334 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC109479.2-201ENST00000517842 174 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC022080.3-201ENST00000544433 482 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC005476.1-201ENST00000554427 397 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 MIR4276-201ENST00000584832 70 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC018462.2-201ENST00000605375 395 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AL627309.6-201ENST00000606857 840 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 uc_338.1-201ENST00000612113 180 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AL161629.2-201ENST00000615347 275 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
VPS4AQ9UN37 SCARNA4-202ENST00000625402 129 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 U4.7-201ENST00000638126 106 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 AC099654.10-201ENST00000640395 161 ntBASIC3.14□□□□□ -1.91
VPS4AQ9UN37 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
VPS4AQ9UN37 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AL356274.2-201ENST00000624379 3752 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 RNU6-942P-201ENST00000363002 107 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 SNORA80A-201ENST00000363922 136 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 RNU1-140P-201ENST00000365040 165 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 RNU6-1227P-201ENST00000383981 107 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 RNU6-43P-201ENST00000384302 107 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AL445529.1-201ENST00000398713 389 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AL138885.1-201ENST00000405921 675 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 MTCO2P27-201ENST00000420740 428 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.639-201ENST00000458981 102 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 RPS29P20-201ENST00000489592 171 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC097462.2-201ENST00000504623 481 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 MTCYBP40-201ENST00000509390 1135 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC005741.1-201ENST00000511094 432 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC113155.1-201ENST00000511141 769 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.687-201ENST00000516558 91 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 IGKV2-26-201ENST00000518305 343 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 NACAP3-201ENST00000552100 481 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC104984.5-201ENST00000586878 94 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AC008121.1-201ENST00000603244 268 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AL133215.3-201ENST00000609801 448 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 AL591516.1-201ENST00000611326 274 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 MIR6128-201ENST00000615528 109 ntBASIC3.13□□□□□ -1.91
VPS4AQ9UN37 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS4AQ9UN37 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS4AQ9UN37 AC110491.1-201ENST00000562191 2010 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms