Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PSMA3P-201ENST00000555485 635 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 LRRC37A5P-203ENST00000580181 585 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 MIR3945-201ENST00000581853 98 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.18□□□□□ -2.06
LHX3Q9UBR4 AC136475.10-201ENST00000620253 385 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 FO624990.1-201ENST00000636373 85 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 ZNF271P-202ENST00000465539 1970 ntBASIC2.18□□□□□ -2.06
LHX3Q9UBR4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 RNA5SP240-201ENST00000365355 128 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 RNU1-52P-201ENST00000384190 164 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 RNU6-606P-201ENST00000384721 111 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 SNORA48.3-201ENST00000391081 134 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 SNORA11.4-201ENST00000408823 129 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 RN7SKP32-201ENST00000410167 303 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 RNU4-46P-201ENST00000410818 138 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 MTATP6P26-201ENST00000445926 662 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 CYP2C59P-201ENST00000457790 269 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 TPT1P7-201ENST00000458300 517 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AC010493.1-201ENST00000513479 292 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 SNORA43.2-201ENST00000516652 128 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 RNU1-104P-201ENST00000517280 175 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AC109329.1-201ENST00000518744 317 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 BNIP3P6-201ENST00000549284 499 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 MIR4703-201ENST00000577728 79 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 MIR4446-201ENST00000578505 67 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 MTND1P15-201ENST00000579262 949 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AL121917.1-203ENST00000605534 577 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AC008536.2-201ENST00000607284 349 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AC093788.1-201ENST00000609356 927 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 AC009233.1-201ENST00000616477 371 ntBASIC2.17□□□□□ -2.06
LHX3Q9UBR4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.17□□□□□ -2.06
LHX3Q9UBR4 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 RNU6-1010P-201ENST00000362757 107 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 RNU1-72P-201ENST00000362976 153 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 RNU6-1120P-201ENST00000362988 108 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 Y_RNA.159-201ENST00000363674 87 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 RNU6-715P-201ENST00000365204 103 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 SNORA67.3-201ENST00000384366 140 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 RNU1-57P-201ENST00000384491 166 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 HMGB1P31-201ENST00000437242 427 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 Z83846.1-201ENST00000446798 265 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 AL139109.1-201ENST00000455491 297 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 AC079382.1-201ENST00000493346 557 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 RPS29P21-201ENST00000496272 170 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 RPL37P25-201ENST00000507308 276 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 CBX3P7-201ENST00000532876 502 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.16□□□□□ -2.06
LHX3Q9UBR4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LHX3Q9UBR4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
LHX3Q9UBR4 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 RNU6-1119P-201ENST00000384349 108 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC068050.1-201ENST00000394891 380 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 RNU2-3P-201ENST00000410144 191 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 CYCSP33-201ENST00000414485 327 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC074117.2-201ENST00000417130 397 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 MTATP6P18-201ENST00000417994 673 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AL451074.3-201ENST00000437709 472 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AL161788.1-201ENST00000441805 169 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 GMFBP1-201ENST00000467831 427 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 RPS3AP17-201ENST00000472594 777 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC104435.1-201ENST00000483483 166 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC092436.1-201ENST00000506450 503 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 MIR5002-201ENST00000584713 97 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC073410.2-201ENST00000603240 332 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AL355297.2-201ENST00000604792 129 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AC104237.2-201ENST00000612456 443 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 U4atac.1-201ENST00000618345 95 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 RMST_7.1-201ENST00000621935 268 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 AL031601.2-202ENST00000622650 282 ntBASIC2.15□□□□□ -2.07
LHX3Q9UBR4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.07
LHX3Q9UBR4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 ZNF680P1-201ENST00000436625 1469 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.14□□□□□ -2.07
LHX3Q9UBR4 SNORA67.1-201ENST00000364749 141 ntBASIC2.14□□□□□ -2.07
LHX3Q9UBR4 Y_RNA.296-201ENST00000364930 108 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms