Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-546P-201ENST00000383991 107 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 MIR1267-201ENST00000408723 78 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC0.84□□□□□ -2.28
SCN3AQ9NY46 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.84□□□□□ -2.28
SCN3AQ9NY46 AC010153.1-201ENST00000432862 727 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.84□□□□□ -2.28
SCN3AQ9NY46 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.84□□□□□ -2.28
SCN3AQ9NY46 AL022238.1-201ENST00000442557 355 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 MTCO2P25-201ENST00000447065 681 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC0.84□□□□□ -2.28
SCN3AQ9NY46 MTND2P33-201ENST00000506452 1031 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 HMGB1P28-201ENST00000507778 552 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 FABP5P5-201ENST00000515537 406 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 DEFB108E-201ENST00000524692 240 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 AC023538.1-201ENST00000534576 736 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.84□□□□□ -2.28
SCN3AQ9NY46 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.84□□□□□ -2.28
SCN3AQ9NY46 BNIP3P30-201ENST00000601184 574 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 AC034229.4-201ENST00000607861 441 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.84□□□□□ -2.28
SCN3AQ9NY46 MIR6788-201ENST00000618842 66 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 AC092125.1-201ENST00000562568 1995 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 Y_RNA.112-201ENST00000363250 102 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 RNU6-188P-201ENST00000364207 107 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 RNU6-611P-201ENST00000384276 104 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 MIR598-201ENST00000384868 97 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AF038458.1-201ENST00000588406 262 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 CLIC4P2-201ENST00000601934 717 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AL022345.1-201ENST00000607292 135 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 MIR6857-201ENST00000613267 93 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AL158163.2-201ENST00000619110 700 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AC009269.6-201ENST00000621778 588 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AC006927.2-201ENST00000639256 389 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.83□□□□□ -2.28
SCN3AQ9NY46 LINC02555-201ENST00000563933 1951 ntBASIC0.83□□□□□ -2.28
SCN3AQ9NY46 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 SNORD1A-201ENST00000364968 72 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AL079342.2-201ENST00000403367 482 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 RPS27P1-201ENST00000450552 247 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC109927.2-201ENST00000506416 303 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC009712.1-201ENST00000564938 316 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 MIR3973-201ENST00000579824 107 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC021171.1-201ENST00000603137 706 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AL161798.1-201ENST00000604630 131 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AL132822.1-201ENST00000617063 513 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 SNORD114-19-201ENST00000363072 75 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 RNU1-23P-201ENST00000363361 144 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 RNA5SP325-201ENST00000363756 130 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 SNORD114-2-201ENST00000363953 78 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 MIR320C1-201ENST00000408566 88 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 MTND4P3-201ENST00000417829 541 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 UBE2V1P4-201ENST00000425374 344 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 MTCO1P27-201ENST00000448269 226 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 RPL21P5-201ENST00000554662 472 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC073544.2-201ENST00000601155 540 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 FAM71BP1-201ENST00000604431 523 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 NDUFA8P1-201ENST00000605525 367 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 TUG1_2.1-201ENST00000614234 87 ntBASIC0.82□□□□□ -2.28
SCN3AQ9NY46 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.82□□□□□ -2.28
SCN3AQ9NY46 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 SNORA25B-201ENST00000365507 128 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 Y_RNA.472-201ENST00000384322 102 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC119751.3-201ENST00000399720 670 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 RNU2-62P-201ENST00000410868 191 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC009518.2-201ENST00000418056 731 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 TOMM22P2-201ENST00000430735 237 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 MTND1P18-201ENST00000448191 573 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 CECR9-201ENST00000453421 199 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC005908.1-201ENST00000468701 347 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC114981.1-201ENST00000503897 678 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC098862.1-201ENST00000504991 413 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC079140.2-201ENST00000506193 142 ntBASIC0.81□□□□□ -2.28
SCN3AQ9NY46 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms