Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 RNU1-54P-201ENST00000517181 120 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AC022634.1-201ENST00000520765 532 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AC006199.1-201ENST00000548728 219 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 C8orf59P2-201ENST00000603441 271 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AL355877.2-201ENST00000603670 358 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AC073544.1-201ENST00000600110 1595 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AC010680.1-201ENST00000590024 3590 ntBASIC3.11□□□□□ -1.91
PAAF1Q9BRP4 AL035425.3-201ENST00000564206 4996 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 Y_RNA.67-201ENST00000362870 100 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 RNU6-78P-201ENST00000362897 107 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 U3.6-201ENST00000363622 211 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 RNU1-100P-201ENST00000365255 165 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 RNU6-790P-201ENST00000384479 105 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 RNU6-95P-201ENST00000384697 107 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AL360182.1-201ENST00000397433 468 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AC245291.1-201ENST00000419501 328 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AL161651.1-201ENST00000440882 223 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AC124916.1-201ENST00000444020 547 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AC025281.1-201ENST00000567026 265 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 MIR4319-201ENST00000577285 85 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 ELOCP29-201ENST00000588193 334 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AC024153.1-201ENST00000603103 365 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 RPL12P50-201ENST00000603116 116 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AL359314.1-201ENST00000616913 261 ntBASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.1□□□□□ -1.91
PAAF1Q9BRP4 AC093908.1-201ENST00000623125 8092 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 SNORA9.2-201ENST00000365361 133 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 Y_RNA.387-201ENST00000383918 102 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 SNORD116-20-201ENST00000384529 92 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 RNU6-851P-201ENST00000384565 107 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AC023141.4-201ENST00000412031 328 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AL591043.1-201ENST00000432461 424 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 MTND1P17-201ENST00000448961 204 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 RN7SL330P-201ENST00000469709 307 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 RNU6-559P-201ENST00000516151 98 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 SNORA43.2-201ENST00000516652 128 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AC093027.1-201ENST00000546698 429 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AC103996.1-201ENST00000555468 102 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 AC016727.1-205ENST00000605437 569 ntBASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
PAAF1Q9BRP4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
PAAF1Q9BRP4 CDC27P3-201ENST00000635418 1910 ntBASIC3.09□□□□□ -1.92
PAAF1Q9BRP4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
PAAF1Q9BRP4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.09□□□□□ -1.92
PAAF1Q9BRP4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 SNORD62.1-201ENST00000362541 86 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 Y_RNA.58-201ENST00000362807 102 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 RNU6-428P-201ENST00000362942 107 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 Y_RNA.154-201ENST00000363624 102 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 RNY3P1-201ENST00000365085 102 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 RNY3-201ENST00000365484 102 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 Y_RNA.490-201ENST00000384413 102 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 RNU6-601P-201ENST00000384540 107 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 FTH1P15-201ENST00000406984 280 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 RN7SKP158-201ENST00000410453 326 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 RNA5SP274-201ENST00000410484 108 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 AC087499.2-201ENST00000432861 149 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 AL645568.3-201ENST00000433683 316 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 PCMTD1P1-201ENST00000455560 355 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 AL441985.1-201ENST00000457727 251 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 RNU7-187P-201ENST00000458985 68 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 MRPL42P6-201ENST00000486397 371 ntBASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.08□□□□□ -1.92
PAAF1Q9BRP4 RNU6-277P-201ENST00000516272 106 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms