Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SNORD60.2-201ENST00000516883 86 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RNA5SP165-201ENST00000517142 115 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC009902.1-201ENST00000519351 183 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AP003122.3-201ENST00000526316 255 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC084851.1-201ENST00000529105 249 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.58□□□□□ -2
USP28Q96RU2 AL391261.3-201ENST00000557194 520 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.58□□□□□ -2
USP28Q96RU2 AC073539.2-201ENST00000597113 165 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AL138889.2-201ENST00000603883 242 ntBASIC2.58□□□□□ -2
USP28Q96RU2 RNU6-89P-201ENST00000606519 100 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC107294.1-201ENST00000609524 467 ntBASIC2.58□□□□□ -2
USP28Q96RU2 DUXAP9-208ENST00000622815 614 ntBASIC2.58□□□□□ -2
USP28Q96RU2 AC099654.14-201ENST00000638599 341 ntBASIC2.58□□□□□ -2
USP28Q96RU2 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.58□□□□□ -2
USP28Q96RU2 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.58□□□□□ -2
USP28Q96RU2 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.58□□□□□ -2
USP28Q96RU2 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
USP28Q96RU2 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.58□□□□□ -2
USP28Q96RU2 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
USP28Q96RU2 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
USP28Q96RU2 Y_RNA.86-201ENST00000363020 111 ntBASIC2.57□□□□□ -2
USP28Q96RU2 Y_RNA.88-201ENST00000363029 99 ntBASIC2.57□□□□□ -2
USP28Q96RU2 Y_RNA.167-201ENST00000363735 109 ntBASIC2.57□□□□□ -2
USP28Q96RU2 RNU6-371P-201ENST00000364283 108 ntBASIC2.57□□□□□ -2
USP28Q96RU2 Y_RNA.231-201ENST00000364358 102 ntBASIC2.57□□□□□ -2
USP28Q96RU2 SNORA80E-201ENST00000384744 137 ntBASIC2.57□□□□□ -2
USP28Q96RU2 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.57□□□□□ -2
USP28Q96RU2 SNORD70.1-201ENST00000391007 85 ntBASIC2.57□□□□□ -2
USP28Q96RU2 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.57□□□□□ -2
USP28Q96RU2 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.57□□□□□ -2
USP28Q96RU2 SRIP2-201ENST00000428470 166 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AL353572.1-201ENST00000442490 417 ntBASIC2.57□□□□□ -2
USP28Q96RU2 HMGN2P26-201ENST00000463169 339 ntBASIC2.57□□□□□ -2
USP28Q96RU2 RPS29P20-201ENST00000489592 171 ntBASIC2.57□□□□□ -2
USP28Q96RU2 RPL38P4-201ENST00000502376 214 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AC018710.1-201ENST00000506509 158 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.57□□□□□ -2
USP28Q96RU2 AC074344.1-201ENST00000512823 224 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AC112206.3-201ENST00000514578 389 ntBASIC2.57□□□□□ -2
USP28Q96RU2 RNU6-1315P-201ENST00000517187 99 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AL137161.1-201ENST00000532231 390 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AC023050.3-201ENST00000541142 333 ntBASIC2.57□□□□□ -2
USP28Q96RU2 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.57□□□□□ -2
USP28Q96RU2 PRELID2P1-201ENST00000552837 301 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
USP28Q96RU2 MIR548S-201ENST00000581352 82 ntBASIC2.57□□□□□ -2
USP28Q96RU2 BNIP3P22-201ENST00000593399 556 ntBASIC2.57□□□□□ -2
USP28Q96RU2 FTX_3.1-201ENST00000610451 147 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AC011890.2-201ENST00000613393 294 ntBASIC2.57□□□□□ -2
USP28Q96RU2 AC006504.8-201ENST00000621046 635 ntBASIC2.57□□□□□ -2
USP28Q96RU2 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.57□□□□□ -2
USP28Q96RU2 CTSLP2-204ENST00000629029 392 ntBASIC2.57□□□□□ -2
USP28Q96RU2 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.57□□□□□ -2
USP28Q96RU2 AC100810.6-201ENST00000638068 285 ntBASIC2.57□□□□□ -2
USP28Q96RU2 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
USP28Q96RU2 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.56□□□□□ -2
USP28Q96RU2 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USP28Q96RU2 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USP28Q96RU2 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.56□□□□□ -2
USP28Q96RU2 RPS4XP7-201ENST00000406274 780 ntBASIC2.56□□□□□ -2
USP28Q96RU2 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.56□□□□□ -2
USP28Q96RU2 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.56□□□□□ -2
USP28Q96RU2 RPL21P90-201ENST00000415692 466 ntBASIC2.56□□□□□ -2
USP28Q96RU2 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.56□□□□□ -2
USP28Q96RU2 AL591704.1-201ENST00000432574 275 ntBASIC2.56□□□□□ -2
USP28Q96RU2 SNRPEP9-201ENST00000436794 238 ntBASIC2.56□□□□□ -2
USP28Q96RU2 AL121601.2-201ENST00000438019 707 ntBASIC2.56□□□□□ -2
USP28Q96RU2 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.56□□□□□ -2
USP28Q96RU2 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.56□□□□□ -2
USP28Q96RU2 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.56□□□□□ -2
USP28Q96RU2 Y_RNA.665-201ENST00000516177 98 ntBASIC2.56□□□□□ -2
USP28Q96RU2 AF235103.2-201ENST00000525753 346 ntBASIC2.56□□□□□ -2
USP28Q96RU2 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.56□□□□□ -2
USP28Q96RU2 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.56□□□□□ -2
USP28Q96RU2 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.56□□□□□ -2
USP28Q96RU2 AC106782.4-201ENST00000568264 210 ntBASIC2.56□□□□□ -2
USP28Q96RU2 AL356280.1-201ENST00000603614 379 ntBASIC2.56□□□□□ -2
USP28Q96RU2 MTND4LP5-201ENST00000605152 292 ntBASIC2.56□□□□□ -2
USP28Q96RU2 CTHRC1P1-201ENST00000605383 469 ntBASIC2.56□□□□□ -2
USP28Q96RU2 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.56□□□□□ -2
USP28Q96RU2 MTND4P14-201ENST00000435799 1354 ntBASIC2.56□□□□□ -2
USP28Q96RU2 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.56□□□□□ -2
USP28Q96RU2 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
USP28Q96RU2 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USP28Q96RU2 Y_RNA.160-201ENST00000363677 92 ntBASIC2.55□□□□□ -2
USP28Q96RU2 RNU6-884P-201ENST00000363889 107 ntBASIC2.55□□□□□ -2
USP28Q96RU2 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
USP28Q96RU2 SNORA67.4-201ENST00000384688 142 ntBASIC2.55□□□□□ -2
USP28Q96RU2 MIR144-201ENST00000384886 86 ntBASIC2.55□□□□□ -2
USP28Q96RU2 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.55□□□□□ -2
USP28Q96RU2 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.55□□□□□ -2
USP28Q96RU2 FGF7P8-201ENST00000402994 292 ntBASIC2.55□□□□□ -2
USP28Q96RU2 AC138393.2-201ENST00000414742 246 ntBASIC2.55□□□□□ -2
USP28Q96RU2 MYL8P-204ENST00000431574 518 ntBASIC2.55□□□□□ -2
USP28Q96RU2 ERLEC1P1-201ENST00000433806 578 ntBASIC2.55□□□□□ -2
USP28Q96RU2 PRPS1P1-201ENST00000445305 876 ntBASIC2.55□□□□□ -2
USP28Q96RU2 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.55□□□□□ -2
USP28Q96RU2 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.55□□□□□ -2
USP28Q96RU2 RNU7-26P-201ENST00000458980 63 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms