Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 PIGFP2-201ENST00000421400 651 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC133104.1-201ENST00000429100 218 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 MTCO2P16-201ENST00000436962 677 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 USP9YP8-201ENST00000441913 500 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 KATNBL1P3-201ENST00000443475 909 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC018437.1-201ENST00000492214 406 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 HMGB3P17-201ENST00000504195 649 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AF213884.2-201ENST00000510417 903 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 MIR4287-201ENST00000579398 78 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC078899.2-201ENST00000595282 212 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC245014.2-201ENST00000603689 287 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AL391646.1-201ENST00000603860 190 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 AC246785.4-201ENST00000605374 287 ntBASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
CCDC54Q8NEL0 RNU6-715P-201ENST00000365204 103 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 RNU6-843P-201ENST00000384454 104 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 DEFB108C-201ENST00000400154 252 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 RPL23AP7-203ENST00000449021 469 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC018868.1-201ENST00000491307 315 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC079140.3-201ENST00000511111 550 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 MRPS17P9-201ENST00000511924 393 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 SNORA43.2-201ENST00000516652 128 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC118273.2-201ENST00000532092 465 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AL356057.1-201ENST00000533798 831 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 CR383656.8-201ENST00000549046 145 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 MIR5583-1-201ENST00000580941 59 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC010620.1-201ENST00000601088 1102 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 BNIP3P30-201ENST00000601184 574 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC012493.3-201ENST00000604494 112 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AL138963.2-201ENST00000605137 226 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 AC022202.1-201ENST00000613515 211 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 MIR6873-201ENST00000622788 63 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 MTND5P30-201ENST00000452896 1731 ntBASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CCDC54Q8NEL0 ELL2P3-201ENST00000457883 1602 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 RNU6-1097P-201ENST00000363586 107 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 MIR95-201ENST00000385072 81 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 RNU2-9P-201ENST00000410194 145 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AL353193.1-201ENST00000421444 268 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AC079781.2-201ENST00000446424 169 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AC140059.1-201ENST00000489238 361 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 RNA5SP112-201ENST00000515937 99 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 Y_RNA.688-201ENST00000516565 95 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 MTCO2P4-201ENST00000517968 247 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 OR11H5P-201ENST00000554039 926 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AC233702.2-202ENST00000562547 291 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 MIR4703-201ENST00000577728 79 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AC008752.3-201ENST00000588113 712 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AC021646.1-201ENST00000605469 484 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 AC009161.2-201ENST00000624626 138 ntBASIC1.78□□□□□ -2.12
CCDC54Q8NEL0 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
CCDC54Q8NEL0 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC006020.1-201ENST00000420179 1854 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AL390237.1-201ENST00000404226 1415 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 RNA5SP289-201ENST00000362332 137 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 RNU1-23P-201ENST00000363361 144 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 Y_RNA.381-201ENST00000365666 102 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 RNU6-45P-201ENST00000384471 107 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 RNU6-456P-201ENST00000384493 107 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 SNORD116-20-201ENST00000384529 92 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 SNORA16.2-201ENST00000390991 127 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 HMGN2P19-201ENST00000425149 265 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 MTCO2P19-201ENST00000427513 598 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AL596276.1-201ENST00000434465 418 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AL360221.1-201ENST00000445989 335 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC010424.1-201ENST00000506336 297 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 MTCYBP40-201ENST00000509390 1135 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 FAM92A1P1-201ENST00000528023 890 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 RANP3-201ENST00000530970 276 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC006362.1-201ENST00000567392 174 ntBASIC1.77□□□□□ -2.13
CCDC54Q8NEL0 AC123912.5-201ENST00000605470 343 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms