Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.40-201ENST00000362645 93 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 Y_RNA.152-201ENST00000363578 100 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 U8.4-201ENST00000363626 134 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 RNU4-50P-201ENST00000364361 141 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 RN7SKP267-201ENST00000410381 285 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 RPL23AP27-201ENST00000415161 451 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 RPS27P29-201ENST00000463110 252 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AL121594.1-201ENST00000475906 575 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 RN7SL177P-201ENST00000476596 299 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC105137.1-201ENST00000484355 562 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC140172.1-201ENST00000502928 141 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 RNU2-53P-201ENST00000516257 147 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 RN7SKP83-201ENST00000516512 178 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 RN7SKP147-201ENST00000517154 244 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC027176.1-201ENST00000560204 514 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC103810.1-201ENST00000579873 453 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC113195.1-201ENST00000579952 141 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AL078605.1-201ENST00000603529 500 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC124312.5-201ENST00000604451 268 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 SDR42E1P1-201ENST00000611327 477 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC091905.4-201ENST00000623432 202 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC010329.5-201ENST00000623497 2174 ntBASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CLRN3Q8NCR9 AC026241.1-201ENST00000517873 2142 ntBASIC3.28□□□□□ -1.89
CLRN3Q8NCR9 MFSD8-242ENST00000641690 4199 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 RNU5F-3P-201ENST00000363767 117 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 SNORD115-8-201ENST00000363856 82 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 SNORD115-38-201ENST00000365037 82 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 U8.10-201ENST00000384260 133 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 RNU6-171P-201ENST00000384354 107 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 RNU1-139P-201ENST00000391307 165 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 CBX3P9-201ENST00000402326 552 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 RPS3AP12-201ENST00000443616 753 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 snoU13.6-201ENST00000458785 104 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 AC074250.1-201ENST00000511117 192 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 RNU6-1114P-201ENST00000516022 107 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 RNA5SP54-201ENST00000516951 92 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 MIR3934-201ENST00000579806 107 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 AC005520.5-201ENST00000613926 164 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 AC140479.6-201ENST00000633535 357 ntBASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CLRN3Q8NCR9 PWAR6-201ENST00000552334 4618 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 SNORA51.11-201ENST00000384442 131 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 RPL21P75-201ENST00000396599 483 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 RPL21P28-201ENST00000401418 483 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AL590556.1-201ENST00000423231 483 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 RPS12P10-201ENST00000427031 377 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 GOT2P5-201ENST00000433995 546 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 RPL21P11-201ENST00000461458 483 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 RPL21P39-201ENST00000463605 483 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC087190.1-201ENST00000484462 480 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC107032.1-201ENST00000485945 480 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC132942.1-201ENST00000486753 483 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC093591.1-201ENST00000491435 481 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 RPL21P16-201ENST00000495531 483 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 MTND4LP22-201ENST00000508209 276 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 IGHV3-76-201ENST00000522465 295 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC006064.5-201ENST00000541782 248 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AL442163.3-201ENST00000554110 156 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC105129.1-201ENST00000560250 297 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 MIR3691-201ENST00000578066 90 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 MIR4738-201ENST00000579134 87 ntBASIC3.26□□□□□ -1.89
CLRN3Q8NCR9 AL390123.1-201ENST00000603216 237 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms